Sphingomonas sp. R1: OIM94_14185
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Entry
OIM94_14185 CDS
T11062
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr00300
Lysine biosynthesis
sprr00470
D-Amino acid metabolism
sprr01100
Metabolic pathways
sprr01110
Biosynthesis of secondary metabolites
sprr01120
Microbial metabolism in diverse environments
sprr01230
Biosynthesis of amino acids
Module
sprr_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
OIM94_14185 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
OIM94_14185 (dapF)
Enzymes [BR:
sprr01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
OIM94_14185 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
UYY76647
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Position
2967093..2968037
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AA seq
314 aa
AA seq
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MRIDYIKCHGSGNDFPLIDARALALGEPEWATLARLLAERGGPVGGDGLLALVPGDDAHA
FGMRMWNSDGSEAETCLNGLRCTARLGFDLLGLDAAQVKLKTSSAQVARDPEIAPGVATI
RTLVGPNSTRSADVGLVGAPEQVIDAPIPGLPNARAFTAVAMPNPHLVTFVDTVDEDELV
ALGTWCESRPALLPARGNVSFVEVRGPSRLYVRTFERGVGLTDSCGSAMAASVLSAALTG
RTAFGVPVEVFNRGGMVRGQAEADRRVMLSGNATFEGAFAIEADLAAGVLGAPEPLAPRP
AEQAAWAAAVAALR
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgactatatcaagtgccatggttcggggaacgacttcccgctgatcgacgcc
cgtgcgctcgcgctgggcgagccggaatgggcgacgctcgcccgcctgctggccgagcgc
ggcggcccggtgggcggcgacggcctgctggcgctggtgccgggggatgacgcccatgcc
ttcggcatgcggatgtggaattcggacgggtccgaagccgagacctgcctgaacggcctg
cgctgcacggcgcggctcgggttcgatctgctcgggctggatgccgcgcaggtgaagctg
aagaccagctcggcgcaggtcgcgcgcgatcccgagatcgccccgggcgtggcgacgatc
cgcacgttggtcgggcccaattcgacgcgcagcgcggatgtcggcctggtcggtgcgccc
gagcaggtgatcgacgcgccgattccgggcctgccgaacgcccgcgccttcaccgccgtg
gcgatgcccaacccgcatctcgtcaccttcgtcgatacggtcgacgaggacgagctggtg
gcgctcggcacctggtgcgagagccgcccggcgctgctgccggcgcgcggcaatgtttcg
ttcgtcgaagtgcgcggtccgtcgcgcctgtacgtccgcaccttcgagcgcggcgtgggg
ctgaccgacagctgcggcagcgcgatggcggcatcggtgctcagtgccgcgcttaccggg
cgcaccgcgttcggcgtgcccgtcgaggtgttcaaccgcggcggcatggtccgcggccag
gccgaggcggatcggcgcgtgatgctgagcggcaatgccaccttcgagggggcgttcgcg
atcgaggcggatctcgcggcgggcgtgctcggcgcgcccgaaccgctggcgccgcgcccc
gccgagcaggccgcatgggccgctgccgtcgccgccctacgctga
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