Sphingomonas sp. R1: OIM94_16130
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Entry
OIM94_16130 CDS
T11062
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sprr Sphingomonas sp. R1
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sprr03032
]
OIM94_16130 (topA)
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_16130 (topA)
Enzymes [BR:
sprr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OIM94_16130 (topA)
DNA replication proteins [BR:
sprr03032
]
Prokaryotic type
DNA Topoisomerases
OIM94_16130 (topA)
DNA repair and recombination proteins [BR:
sprr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OIM94_16130 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
HC2
Motif
Other DBs
NCBI-ProteinID:
UYY77006
LinkDB
All DBs
Position
3372455..3375052
Genome browser
AA seq
865 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGKDYRVLASYGHVRDLPARDGSVNPDDSFAMEWETYADKSK
QLKAIADEAKKADRLILATDPDREGEAISWHVQEVLRNKKALPKEVERVTFNAITKPAIL
EAMQRPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVGRE
REIESFVAQEYWSVIAELESDGTPFQARLVKWKGEKLDRLSIGDQGSAEAAKKAVEEGRF
TVVAVETKPAMRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQALYEDGAITYMRTDGVQ
MDPSAIQAARKAVADRYDGSYVPDKPRQYQTKAKNAQEAHEAIRPTDFGKDRAGSGDHAR
LYDLIWKRALASQMASARMERTTVDLADGTGQHGLRATGQVVLFPGYLALYEEGKDDEGD
EDSRRLPRMSEGASPAKKAVNAEQHFTQPPPRFSEASLVKRLEELGIGRPSTYASIIQVL
KDRAYVRVEKNRFFAEESGRLLTAFLERFFEKYVSFDFTAELEEELDDVSGGRAAWQAVL
EAFWRDFKPRTTEVMEQKPSDITAALDQFLEPYLFPAKADGSDPRLCPNCGVGKLALRGG
RFGAFVACSNYPECKYTRRFGQPGGEGSEDTGPEVLGQDPETGLNVERKSGRFGPYIQLG
EGKDAARASIPKDVDLDLEWALKLLKLPRTIGNHPETGNPITASIGRYGPYLAHDGKYAR
LQSTAEVFETGMNAAVVKLAEAAAGGGRPARGAAREPLKIFGKHPRTEAEIKLMEGRYGA
YLTDGETNATLPKTIDKDALTLEEAAQLIDAKAAQGPAKGKAKKKAPAKKAAAKKPAAKA
AAGEKAGAAKKPAAKKAPAKKKAAE
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtcatcgtagagtcgcccgccaaggcgaagaccatcgagaaatatctcggc
aaggattatcgcgtgctggccagctatggtcatgtccgcgacctgcccgcccgcgacggt
tcggtgaaccccgacgattcgttcgcgatggagtgggagacctatgccgacaagtcgaag
cagctgaaggcgatcgccgacgaggcgaagaaggccgaccgcctgatcctcgcgaccgac
cctgatcgcgaaggggaggcgatcagctggcacgtccaggaagtgctgcgcaacaagaag
gcgctccccaaggaggtcgagcgagtcaccttcaacgcgatcaccaagccggcgatcctc
gaggcgatgcagcgcccgcgcgagctggataccgacctgatcgacgcctatcgcgcccgc
cgcgcgctggactatctggtcggcttcacgctttcgccggtgctgtggcgcaagctgccg
ggcgccaagtcggcgggccgcgtccagtcggtcgcgctgcggctgatcgtcgggcgcgag
cgcgagatcgaaagctttgtcgcgcaggaatattggtcggtcatcgccgagttggaatcg
gacggcaccccgttccaggcgcgcctcgtcaagtggaagggtgagaagctcgaccgcctg
tcgatcggcgaccaaggcagcgccgaggccgccaagaaggcggtcgaggaaggccgcttc
actgtcgtcgcggtcgagaccaagccggcgatgcgcaacccgccgccgcccttcaccacc
tcgacgttgcagcaggaggcggcgcgcaagctcggcttctcggccagccacacgatgcgg
atcgcgcaggcgctctacgaggacggcgcgatcacctatatgcgtaccgacggcgtccag
atggatccctcggcgatccaggcggcgcgcaaggcggtggccgatcgctatgacggcagc
tacgtgccggacaagccgcgccagtaccagaccaaggcgaagaacgcccaggaagcgcac
gaggcgatccgtccgaccgatttcggcaaggatcgcgccggttcgggcgaccatgcccgg
ctgtacgacctgatctggaagcgcgcgctcgccagccagatggcctcggcccgcatggag
cgtacgacggtcgatctggcggatggcaccggccagcacggcctgcgcgccaccggccag
gtggtgctcttccccggctatctcgcgctctacgaagagggcaaggatgacgagggcgac
gaggacagccgccgcctgccgcgcatgtccgaaggcgcctcgcccgccaagaaggcggtc
aacgccgagcagcacttcacccagccgccgccgcgtttctccgaagcctcgctggtcaag
cggctggaggagctcggcatcggtcgcccgtcgacctatgcctcgatcatccaggtgctc
aaggaccgcgcctatgtgcgggtggagaagaaccgcttcttcgccgaggagagcggccgc
ctgctgaccgcgttcctcgagcgcttcttcgagaagtatgtgtcgttcgacttcaccgcc
gagctcgaggaagagctggacgacgtgtccggcgggcgtgccgcgtggcaggcggtgctg
gaagccttctggcgcgacttcaagccgcgcaccaccgaggtgatggagcagaagccctcc
gacatcaccgccgcgctcgaccagttcctcgagccctatctgttccccgccaaggcggac
ggcagcgatccgcggctgtgcccgaattgcggcgtgggcaagcttgccttgcgagggggc
cggttcggtgcgttcgtcgcctgctccaactatccggagtgcaagtacacgcggcgcttc
ggccagccgggcggcgaggggagcgaggatacgggtccggaagtgctggggcaggacccc
gaaaccgggctcaatgtcgagcgcaagtcggggcggttcgggccgtatatccagctcggc
gagggcaaggatgcggcgcgcgcttcgatcccgaaggacgtcgatctcgatctggaatgg
gcgctcaagctgctcaagctgccgcgcacgatcggcaaccacccggagacgggaaacccg
atcaccgcttcgatcggccgttatggcccgtatctggcgcatgacggcaaatatgcccgg
ctgcagtcgaccgccgaggtgttcgagaccggcatgaacgccgcggtggtcaagctggcc
gaggcagcggcgggcggtggtcgcccggcgcgcggggcggcgcgcgagccgctcaagata
ttcggcaagcatccgcgcaccgaggccgagatcaagctgatggagggccgctacggcgcc
tacctcaccgacggcgagaccaacgccacgctgcccaagacgatcgacaaggacgcgctg
accctggaggaagccgcccagctgatcgacgccaaggcggcgcaggggccggccaagggg
aaggcgaagaagaaggcgccggcgaagaaggcggcggcgaagaagccggcggccaaggct
gcggcgggcgagaaggccggggcggccaagaagcctgcggcgaagaaggcgccggcgaag
aagaaggcggcggagtaa
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