Sphingomonas sp. R1: OIM94_16950
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Entry
OIM94_16950 CDS
T11062
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OIM94_16950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sprr03021
]
OIM94_16950
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_16950
Enzymes [BR:
sprr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OIM94_16950
Transcription machinery [BR:
sprr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OIM94_16950
DNA repair and recombination proteins [BR:
sprr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OIM94_16950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
RNA_pol_L_2
TmoB
IDH
Motif
Other DBs
NCBI-ProteinID:
UYY77161
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All DBs
Position
3548638..3549705
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AA seq
355 aa
AA seq
DB search
MSVNAKNWQELKKPNGLEKKPGGDPKRKSTFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMQGEGPKRLQLSATGPAEVKAGDI
AVSGDIEVMNPELVICHLDDGATLNMELTADVGKGYVPATANRPADAPIGLIPVDALFSP
VRQVSYKVENTRVGQELDYDKLTLTVETDGTVTPEDSLAYAARILQDQLALFVHFDDSSI
TRAAPVGMAPAAAPAEGGAGDAAQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQK
TEAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEIMG
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggtcaacgctaagaactggcaggaactcaagaagcccaacggcctcgagaagaag
cccggtggcgatcccaagcggaagtcgacgttcgtcgccgagccgctggagcgtggcttc
ggcctcacgctcggcaacgcgctgcgtcgcgtgctgctgtcgtcgctgcagggcgcggcg
gtcacctcgatcaagatcgagaacgtgctgcacgaattctcgtcgctcgccggcgtgcgc
gaggacgtgaccgacatcgtcctcaacgtgaagcagatcgcgctcaagatgcagggcgaa
ggcccgaagcgtctgcagctgtcggccaccggcccggcggaagtcaaggcaggcgacatc
gcggtttcgggcgacatcgaagtgatgaaccccgagctggtgatctgccacctcgacgac
ggcgcgaccctgaacatggaactgaccgcggacgtgggtaagggctatgtgcccgccacc
gcgaaccgcccggcggatgcaccgatcggcctgatcccggtcgatgcgctgttcagcccg
gtgcgtcaggtctcgtataaggtcgagaacacccgcgtcggccaggagctcgactacgac
aagctcacgctgaccgtcgagaccgacggcacggtgacgcctgaggactcgctggcctat
gccgcgcggatcctgcaggaccagctggcgctgttcgtccacttcgacgattcgtcgatc
acccgggcagccccggtcggcatggcgccggcagcggcaccggcggaaggtggcgcaggc
gatgccgcgcagatcaaccgctatctgctcaagaaggtcgacgagctggagctttcggtc
cgctcggccaactgcctcaagaacgacaacatcatctacatcggcgatctggtccagaag
accgaagccgagatgctgcgcacgccgaacttcggccgcaagtcgctcaacgagatcaag
gaagtcctctccagcatgggcctgcgcctgggcatggaaatcccgggctggccgcccgag
aacatcgaggaaatggccaagaagctcgaacaggagatcatgggctga
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