Sphingobium sp. RSMS: EGM87_01215
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Entry
EGM87_01215 CDS
T10811
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sprs Sphingobium sp. RSMS
Pathway
sprs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EGM87_01215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sprs03400
]
EGM87_01215
Enzymes [BR:
sprs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EGM87_01215
DNA repair and recombination proteins [BR:
sprs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EGM87_01215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_3primeBD
PriA_C
ResIII
Helicase_C
Zn_ribbon_PriA
Zn_ribbon_6
AAA_30
zf_Rg
PIF1
Motif
Other DBs
NCBI-ProteinID:
UXC91140
LinkDB
All DBs
Position
1:complement(267683..269854)
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AA seq
723 aa
AA seq
DB search
MSSRARVILLNAALGPLDYRVPHGMAVKPGSIVVAPLGPRQIVGVVWDEDSFPEIETVGD
NRLRNVVGPVDAPPVPETLRRLIEWTADYYLAPIAAVLRMTLASMAALEGARTVIEYRAT
GDLPDRMTEQRTQAMERIGERQGLIRELAMIGGVSDAVIRGLIKAGAFEAVEVSVDTPFP
MPNPDHAPPLLSDGQGAAADQFIEAVRERAFAPFLLDGVTGSGKTEVYFEAIAAAIREGR
QVLVLLPEIALTEPFLERFEKRFGTVPVNWHSGLRQSERRRAWRAIAAGEASVVVGARSA
LFLPYPNLGLIVVDEAHEASFKQEDGVHYHARDVAVMRGLIEKFPVILASATPAIETRHQ
VELGRYREIKLPSRFGGAAMPDIEGINLLTDPPERGRWIAPPLVRAIDETMEKGEQSLLF
LNRRGYAPLTLCRHCGYRFQCPNCTAWMVEHRLTHRLACHHCGHVIPAPRFCPECKEEDS
LVACGPGVERIADEVKALWPNARTAIVTSDTLWSPAKVAEFVKSVEAGAVDIIIGTQLVT
KGYHFPNLTLVGVIDADLGLEGGDLRASERTFQQIVQVAGRAGRGQKPGRVFIQTRMPEA
EVIKALIAGDVERFYEVETENRRHANAPPFGRFAAIIVSSEDADEAAEVARLIGKSAPSI
DGMRVYGPAPAPLSVLRGRHRHRLLIHATRQVDVQDAIREWLGNLSWKSGTRVAVDVDPY
SFM
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgcgcgcccgtgtcatcctgctgaacgccgccctggggccgctcgattatcgc
gtgccgcacggaatggcggtcaagcccggcagcatcgtcgtcgcgccgctgggtccgcgc
cagatcgtcggcgtggtgtgggacgaggacagctttcccgaaatcgagacggtgggcgac
aaccgcctgcgcaacgtcgtcggcccggtcgacgcgcccccggtgccggagacgctgcgc
cgcctgatcgagtggacggcggactattatctcgcccccatcgccgccgtgctgcgcatg
acgctggcgtccatggcggcgctggagggcgcgcgcaccgtcatcgaatatcgcgccacg
ggcgaccttcctgaccgcatgaccgaacagcgcacccaggcgatggagcgcatcggcgaa
cggcaggggctgatccgcgagctggcgatgatcgggggagtcagcgacgcggtgatccgc
ggcctcatcaaggcgggcgccttcgaagcggtggaggtcagcgtcgacacccccttcccc
atgccgaatcccgatcatgccccgccgctgctgtccgatgggcaaggcgcggccgccgac
cagttcatcgaagcggtcagggaacgggccttcgcccccttcctgctcgacggcgtgacc
ggatcgggcaagacggaagtctatttcgaagctatcgccgccgctatccgcgagggacgg
caggtgctggtgctgctccccgaaatcgcgctgaccgagccctttctggaacgtttcgaa
aagcgcttcggcacggtccccgtcaactggcacagcggcctgcgccagagcgagcggcgg
cgcgcctggcgggcgatcgcggcgggcgaggcgtcggtggtggtcggcgcccgctccgcc
ctgttcctgccctatcccaatctgggcctgatcgtggtggacgaagcgcatgaggcgagc
ttcaagcaggaggacggggtccactatcatgcccgcgacgtggcggtgatgcgcggcctt
atagagaaattcccggtcatcctcgcctccgccacccccgccatagagacgcggcatcag
gtcgagcttggccgctacagggaaatcaagctgccttcccgcttcggcggcgcggccatg
ccggacatagagggcatcaacctgctcaccgacccgccggagcgcggccgctggatcgcg
ccgccgctggtgcgcgccatcgacgagacgatggaaaagggcgagcagagcctgctcttc
ctcaaccggcggggctatgcgccgctgacgctctgccgccattgcggctatcgcttccaa
tgccccaattgcaccgcctggatggtcgagcaccggctgacccaccgcctggcctgccac
cattgcggccatgtcatccccgcgccgcgcttctgcccggaatgcaaggaggaggatagc
cttgtcgcctgcggccccggcgtcgagcgcatcgcggacgaggtgaaggcgctctggccc
aatgcgcgcaccgccatcgtcacctccgacacgctctggtcgcccgccaaggtcgcggaa
ttcgtgaagtcggtggaggcgggcgcggtcgacatcatcatcggcacgcagctcgtcacc
aagggctatcacttccccaacctgacgctggtgggcgtgatcgatgccgatctgggcctc
gaaggcggcgacctgcgcgcctcggagcgtaccttccagcagatcgtccaggtcgccgga
cgcgccgggcgcgggcagaaaccgggccgcgtcttcatccagacccgcatgccggaggca
gaggtcatcaaggccctgatcgcaggcgatgtggagcgcttctacgaggtggagacggag
aatcgccgccacgccaacgccccgcccttcggccgcttcgccgcgatcatcgtgtccagc
gaggatgcggacgaagccgccgaggtcgcgcggctgatcggcaagtccgcgccctcgatc
gacgggatgcgcgtctacggccccgccccggccccgctttccgtgctgcgcgggcggcac
cgccaccgcctgctgatccacgcgacgcggcaggtcgacgtgcaggacgcgatccgggaa
tggctgggcaacctcagctggaaatcgggcacaagggtggcggtcgacgtcgacccgtac
agcttcatgtga
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