Sphingobium sp. RSMS: EGM87_02640
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Entry
EGM87_02640 CDS
T10811
Name
(GenBank) Ig-like domain-containing protein
KO
K20276
large repetitive protein
Organism
sprs Sphingobium sp. RSMS
Pathway
sprs02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
EGM87_02640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_13
Big_6
HemolysinCabind
BapA_N
Big_9
DUF6209
DUF6802
Big_3_5
Mo-co_dimer
Motif
Other DBs
NCBI-ProteinID:
UXC91398
LinkDB
All DBs
Position
1:560466..566021
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AA seq
1851 aa
AA seq
DB search
MDKRIDITVRQTGATQTHVVQQQNAVIQAQGGSAIKVTAARSEVTAMQREGDDLILHFAD
GTAVRLEGYFNCPPGDIADLIFIEPGNGQQWLTDLGSEACYLPTDTTTEALSYSFAPAGA
AGGLSGGLLAGLGAVAAGIGVAAAAGGGGGGGGSDGGTAVDSTPPAAPTVAPTNGRSLSG
SAEAGSTVRIDVNGDGSVDATATADNAGRWSYTPATPIGDGVTVRVTAVDAAGNASPSTS
VTVDAAAPPAPVINPSNGTALGGTAEAGATIGLDLDGDGDVDATTTADASGNWNYTPSTP
IPDGTTVTAVATDAVGNSSAPASIDIDAVPPAAPLVDPSNGTELTGTAEPGATVGIDSDG
DGTIDTTVPVDDQGNWSHVPATPIADGTTVEVVATDPSGNTSSPATVVVDATAPAIPVVG
TVVDDAGTTTGPVANGGSTDDTTPTLSGSGVEANAIVSVYDGGALLGTVVADTSGNWNFT
PTTPLLEGTHSFTVTATDGTGNVSAASAAYVLTVDTSAPAAPLLAPTDGTTVSGSAEAGA
TIDLDTDGDGLSDATAVADASGDWSITLASPLANGTVISAIATDAAGNSSTPDTVTVDTG
LDTTPPAIPTIGAVADDVGPILGAVANGGSTDDMTPTLSGTGAEANAIVSVYDGGTLLGT
AAVDGSGNWNFTPTAPLGEGTHSLTVTATDAAGNVSAASAAYVLTVDTSAPATPVLAPTD
GTTISGTAEAGATIALDTDGDGISDETTTVDASGDWSITLASPLANGTVVTAIATDAAGN
SSTPDTVTVDTGLDTTPPAIPGIGGVADDVGAILGPIANGGSTDDTVPTLSGTGVEANAI
VSVYDGSTLLGTTSADGSGNWSFAPTAPLGEGTHSFTVTATDAAGNVSAASAAYVLTVDT
SAPAAPILAPSDGTTLSGIAEAGAIIDLDTDGDGVFDETTTADPSGDWSITLASPLANGT
VVNAIATDAAGNSSLAGAVTVNTGLDTTPPAVPSIAAVADDAGSILGPVANGGITDDATP
TLSGLGVEANAIISVYDGSTLLGTATADALGNWSFTPTTPLGAGSHSFTVTATDAAGNES
AASAAYALTVDTVASIPTITGMTDNAGSVLGGVISGGTTDDTTPTLSGTGAEANASISIY
DGNILLGTATADASGNWSFTPTTPLGEGLHSFTATATDAAGNVSLASAAYAVTIDLTVPP
VPTITGASDNAGSILGGVISGGSTDDTTPTLSGTGAEANGTVSVYDGSTLLGTATADASG
NWNFTPTAPLGEGPHSFTAVGVDAAGNASIASAPYALTIDLTIPAAPTITGVSDNVGSVL
GAVALGGATDDTTPTISGTGAEANANVSVYDGGTLLGTATADVSGNWNFTPTTPLGNGPH
SFTAVVTDAVGNTGLASAPYAIAIDTVAPTATVAITALRDDTQVVGDWATDDTSPTIIGT
LSAPLAGGERVEVSLDGGATWTQAATSGTSWSYGPGTLGAGAHVVDVRVVDAVGNVGSTA
AQPITITNVNDAPIVLASDSSLLGLVSAEALGLLDIGSQAFVAIDPENSLQSVVLDFTPL
LTVGTQVFTVSQDLATELGLAVNVNNQFVTVLGTPVSTISSTMTITALDGGPIDNMAINE
LLRAVHFSSPLGLNVNLLSGISITATDTAGASRTDNAASLLDANLLNTLLGGSSDPTILE
GTAGVNILTGTAANEHLYGYGGADILQGGGGNDILRGGAGADTLDGGTGNDILLFDAADT
LIDGGAGADALLVRGDSSVSLNLDAATNIRNMERIDLGVGDTGHSLTLTEAGIIQATDAN
RQLIITGENNDSVTMTGAVHVGQALVDNHAYEQYSLGTTTVLIEDPVLVVV
NT seq
5556 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcgcatcgacatcaccgttcgtcagacgggtgcaacccaaactcacgtcgtt
cagcaacaaaatgccgtgatccaggctcagggcggctcagcgatcaaggtgacggctgcg
cgcagcgaggtgaccgcgatgcagcgtgaaggggacgatctgatcctgcattttgccgac
ggtacggcggtccggctggagggttatttcaattgtccgccgggagacattgccgacctt
attttcatcgaaccaggcaatgggcagcagtggctgaccgatctgggcagcgaagcctgt
tatctgcccaccgacacgaccaccgaagccctgagctattccttcgcccctgcaggcgct
gcggggggtctgagcggcggcctgctggcgggattgggagcggtggcagccggcatcggc
gtcgcggctgccgctggcggtggtggcggcgggggtgggtcggatggcgggacggctgtg
gatagcacgcccccggcagcgccgaccgtggcgccgacaaatggccgtagcttgtcgggc
tctgcggaagcgggttcgacggtgcgcattgacgtcaatggcgacggctcggtcgatgcg
acggccaccgctgacaatgccggccggtggagctatacgccggccacgcccatcggcgat
ggcgtgacggtgcgggttacggcagtggatgcggcgggcaatgcgtcgccatcgaccagc
gtgacggtggacgcggccgctccgccggcgccggtgatcaatcccagcaacggcacggcg
ctcggcggtacggctgaggcaggggccacgatcgggctggatctggatggcgacggcgac
gtcgatgcgacgaccacggccgatgcgtccggtaactggaactatacgccttcgacgccg
attccagatgggacgacggtgacggccgttgcgaccgatgcggtgggaaacagctccgcg
cctgccagcatcgacattgacgccgtgccccccgccgctccgctcgtcgatccgagcaac
gggaccgaattgaccggaacggcggagcccggcgcgactgtcggcatcgatagcgatggc
gacggcactatcgacacgacggttcctgtcgatgaccaaggcaattggagccatgtgccg
gcgacacccattgccgacggcacgacggtggaggtcgttgcgaccgatccgtccggcaac
acatcgtcccctgcgacggtcgtggtcgacgccactgcgcctgcgatccccgtggtgggc
actgtagtcgacgatgccggcacgacgaccggccctgtcgccaatgggggcagcacggat
gatacgacgccgacgctgtcgggaagcggagtagaggcgaacgccatcgtctctgtctat
gacggcggcgccttgcttgggacagtcgttgcggacacctccggcaactggaacttcacg
cccaccacgccattgttggaagggacgcacagcttcaccgtcacggcgacggatgggacg
ggcaatgtcagcgcggcgtccgctgcctatgtcctgaccgtcgacaccagcgccccggct
gcgccgctgctcgcgcctaccgacgggacgacggtttcgggctcggcggaggccggggca
acgatcgatctcgacacggatggcgacggcctgtccgatgcgacggcggtcgcggatgca
tcgggtgactggagcatcaccttggcttcgccgctggcgaacggtacggtgatcagcgcc
atcgccacggatgcggctggcaacagctccacgcccgatacggtgactgtcgataccgga
ctcgacactacgccccccgccattccgaccatcggcgccgtagccgacgatgtcggcccg
atccttggcgctgtcgccaatggcggcagcacggatgacatgacgccaacgctgtccgga
accggcgccgaagcgaatgccatcgtctccgtttacgacggcggcacgctgctcggcacg
gccgcggtggacggttcgggcaactggaacttcacccccaccgcgccgctgggtgaggga
acgcatagcctgaccgtcacagcaaccgacgcggcgggcaatgtcagcgcggcatcggcc
gcctatgtcctgaccgtcgataccagtgctccagcaacgcctgtgcttgccccgaccgac
ggcacgacaatatcgggcactgcggaggctggagcgaccatcgctctggataccgacggt
gacggcatatccgacgagacgacgacggtggacgcatcgggcgattggagcattacgctg
gcatcgccgctcgcaaatggaacggtggtgaccgccatcgctaccgatgcggcaggcaac
agctccacccccgatacggtgaccgtcgatacaggtctggatacgactcctccagccatt
cccggaattggcggcgtagccgatgatgtcggcgcgatcctgggccccatcgccaatggc
ggcagcacggatgacacggttccgaccctctcgggaacgggcgtggaggcgaatgccatt
gtctccgtctacgacggcagcaccttgctgggtacgacgagcgcggacggttcgggcaac
tggagcttcgcgcccaccgcgccgctgggcgaggggacgcacagcttcaccgtcacggcg
accgacgcggcaggcaatgtcagcgcggcgtctgccgcctatgtgctgaccgtcgacacc
agcgctccggccgcgccgattctggctccgtccgacggaaccacgctatcgggtatcgcg
gaagccggcgcgatcatcgacctcgacaccgatggcgatggcgtgttcgatgagaccacg
accgcggacccctcgggcgattggagcatcaccctggcttccccactggcgaatggaacg
gtcgtcaacgcgattgcgaccgatgccgcgggcaatagctcgcttgccggtgcagtgacc
gtcaataccggcctcgacaccacgccgcctgcggtgccgtcgatagcggcggtggccgac
gatgcggggtcgatcctcggccctgtcgccaatggcgggatcacggacgatgcgacgcct
accctatcgggactcggggtcgaggcgaatgccattatttcggtctatgacggcagcacc
ctgctcggcacggcgacggcggacgctttgggcaattggagcttcacgccgaccacgccg
ctgggtgcgggttcgcacagcttcaccgtcacggccacggatgcggcggggaatgagagc
gcggcttcagcggcctatgccttgaccgtcgataccgtcgcctccattccgacgatcacc
ggcatgaccgacaatgcgggttcggtccttggcggcgtgatctcgggcggaacgactgac
gacaccacgcccactctctccggaaccggcgcagaggcgaacgcaagcatctcgatctac
gacggcaatatcctgctgggtacggcgacggcggatgcttcgggcaattggagcttcacg
ccgaccacgccgctgggcgagggcttgcacagcttcaccgccaccgcgaccgatgcggcg
ggcaatgtcagcctcgcttcggcggcctatgcggtcacgatagacctgaccgtgccgccc
gtgccgacgatcaccggggccagcgacaatgccggttcgatcctaggcggcgtgatttcc
ggtgggtcgaccgacgacacgacgccgaccctttccggaaccggtgcggaagcgaacggg
accgtttcggtctatgacggcagcaccctgctcggcacggcgactgcggacgcttcgggc
aactggaatttcacgcccaccgctccgctgggcgaggggccgcacagcttcaccgccgtt
ggcgtcgacgcagcaggcaatgccagcattgcctcggcgccttatgcgctgacgatagac
ctcaccatcccggccgcgccgacgattaccggcgtcagcgacaatgtgggctcggtgctg
ggcgcggtggctctgggaggggcgacggacgacacgacgccgaccatttcgggaacaggc
gcggaggcgaacgccaacgtctccgtctatgatggcggcacgctgctgggcaccgcaacg
gcggacgtttcgggcaactggaatttcacgccgacaacgcccttgggcaatggaccgcac
agcttcaccgctgtcgtgacggatgccgtgggcaatacgggcctggcgtcggcgccctat
gccatagccatcgatactgtcgccccgaccgccacggtcgcgatcacggccctgcgcgac
gacacgcaggtggtgggcgactgggccaccgacgatacgtccccgaccatcataggcacg
ttgagcgcaccgctggccggcggggagcgggtcgaggtcagcctggatggcggcgccacc
tggacgcaggcggcgaccagcggcaccagctggtcctacggtcccggcacgctcggcgcc
ggcgcccatgtggtggacgtgcgcgtcgtggatgcggtcggcaatgtgggctccacggcc
gcccagccgatcaccatcacgaacgtcaacgacgcgcccatcgtcctggcgtcggacagc
agcctgctggggcttgtcagtgcggaagccctgggcctgctcgacatcggcagccaggcc
ttcgtggcgatcgatccggagaacagcctgcaaagcgtcgtgctggactttacgcccctg
ctgaccgtcggcacgcaggtcttcaccgtgtcgcaggatctggcgaccgaactcggcctt
gcggtcaacgtcaacaaccagttcgtgaccgtgctggggacgcccgtctccaccatctcc
tcgaccatgacgataacggcgctggatggcgggccgatcgacaatatggccatcaacgaa
ttgctgagggcggtgcatttcagttcaccgcttggtctcaacgtgaacctgctgtcaggc
atcagcatcacggcgaccgatacggccggcgcgtcgcggacggacaatgcggccagtctg
ctcgacgccaatctgctcaacaccctgcttggcggcagcagcgatccgaccattttggag
ggcacggccggcgtcaacatattgaccggcaccgccgccaatgaacatctctacggctat
ggcggcgccgatattctccagggcggcggcggcaacgacatattgcgcggcggcgccggc
gccgacacattggacggcggcaccgggaacgacatattgctgttcgacgcggccgatacg
ctgatcgacggcggagcgggcgctgatgcgctgctcgtccgcggcgacagcagcgtgtcg
ctgaacctcgatgcggcgaccaatatccgcaatatggaaaggatcgacctgggcgtgggc
gataccggacacagcctcaccttgacggaggccggcatcatccaggcgacggatgcgaac
cggcaactcatcatcacgggcgagaataacgacagcgtgaccatgaccggcgcggtccat
gtcggccaggcgctggtcgataaccacgcctatgagcaatatagtctgggaaccacgacc
gtgctcatcgaagatcccgtgctggtggtggtttga
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