Sphingobium sp. RSMS: EGM87_03320
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Entry
EGM87_03320 CDS
T10811
Name
(GenBank) Ig-like domain-containing protein
Organism
sprs Sphingobium sp. RSMS
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_4
Big_9
SPM
DUF5801
Cadherin_5
Motif
Other DBs
NCBI-ProteinID:
UXC91531
LinkDB
All DBs
Position
1:712973..722683
Genome browser
AA seq
3236 aa
AA seq
DB search
MDFERDWDSKDAADHQQALHPEAAALAAKGKAVHPGKMHRAEVVRTVEPNPDGTVVLPAG
TDINGIEVSGRNLIVHLPDGTDLVILDGAVVMPRLVVGDVEIPSVNLAALLIGEEPQPAA
GPPRSSGGNFTGPDGDVGDPHGLGDLLPPTELLFTQPEEREILPIAPNEEPEVTIITPDQ
PAGATAATAGVSEAGLPARGNEPAGSAAAGDGERTTGTIAITASDGLAGVTINGVAITTV
GQTVTTPLGVLTITSIADGSIGYSYVLTDNVVGTPPAEVFTVVVTDSDGDQASATLTISI
ADDAPTAVNDADSVTEDGPLVADGNVLTGSGGSDANATDGVADIQGADGAVVSTTGTFQG
TYGTLTLNASGAYSYTLANGNAAVQFLVPGQTLTDSFSYTITDADGDTSTATLTITINGA
DDGITITGLNGAPGIEGAEVVLLENDLADGSSPDAAGLTKTGSFGVSGADGLSGVTVGGV
SVLANGAFVAGQVVTTPVGTLTITGFTATATQGGVPTAGTFTYSFVLTDNSLGHGAAGAD
SILQSFAVVATDRNGSTANATVDVQIVDDVPTANNDVDGVAAGTYGPETGNVITGAGTVS
GAAGADIKGADGAVVSTTGTFEGAYGTLTLNADGSYSYVRAAGTPGGVSDSFSYTLRDGD
GDTSTATLRIDIANSDVMIISIPKVGDGTIVDESGLTNPMGSNAGSGVDTTDGTITYTAP
DGPASVTINNIPITGVGQEIVTDKGILTITGLSEGSIDYSYTLTTNTAGDNVTDSFVVTV
TDVDGDTATDTLTITIIDDVPTAVSDADSVREDGPLVADGNVIAGSGGADANATDGNADV
QGADGAHVSAIVFGETAGTVGAPLAGLYGSLLIQSDGSYAYTLNNENGVVQGLDKNQTLT
ETFTYTLTDGDGDNSSATITITIQGSDDGVTINGLDGEGAEETVFENDLPGGSSENAAAL
TQTGSFTLSALDGVAAITVGGQPIFGANGFISGVTLSNAYGTLSITGFTPTVGADGEVIG
GTVSYSYVLTDNTLLHSGVNDGSLTDSFAVVVTDTDGSTDSASLDIRVVDDVPTAVDDVA
GQLTENAAVTIDVFANDVAGADGVNLASGVALETGAAKGTVVYEGNGVFLYTPNAGAEGS
DSFTYTITDGDGDKSTATVTINLLQDSTPTVSVTDMTVSEAGLPGGTQEAGNSETATGAM
TVATGGDTLTRVEVQDKNGAWVDVTAATAGTPVVVAGAAGALTVTSDGAGHYSYSYTLAV
NDPAHPDNVTSDGDGISGAADPKAGDAFAVRVTDSDGDVSPADTINVTVLDDAPVATADS
GSVSEGDSLIVATADGVLHNDQPGADGYAPGVVGVAKGSDPSSPVSGQVGTAVAGDYGTL
TLFADGSYRYDATPNAISADKQDVFVYTIRDGDGDLATSTLTINVANVALAADNQTKTVF
EAALDTGISGDDIAAGSVTGSTPGEPTETATGQLNVVGAVSYTLTSSATGSHGQIQLNAN
GSYTYTLTSPVDGPTANDGPLTFAGAEVFTYQAVDGSGNIANGTITIDVVDDVPTAADDA
GLSVAEDGADIGGNVLTNDTPGADGATLTSVTIGGVTTAINAVGTTNVSGAFGAYTFTAA
GAWTFNPSTNLNNASGVSAGFSYVITDGDGDQSTAVQPITVTDGANPIAGAPISLALDDQ
NLAGGTTQGNPDSASGAITFTPGSDAITSIVFGGTGSLTGDLTWLRVSDTKITGSDERGV
VVTLDLSLVGNVATVTATLNDNYDTHPGIDADDLVALGSVQVIAQDTDGDTAAGTVSVSV
SDDRPVVSANPVAQLDDDALGGNASGTGDDANSLNATGTLAHDYRADGPGGIALLATGAP
VGFTYESNGTVLLVKQNGTTVLTVTLTDPVAGTYSVVQNAAIVHPAGGDENNVSFDIAYR
VTDADNDTATGTLTINVDDDTPVAANDTDVVKEDVTLTASGNVLTGVGGDGNPAGADSLG
ADGPAAGGAVTAVTGGTVGGNAVGSYGTLVLNASGGYTYTLNNGLPAVQHLDDGQTLSDI
FTYTITDGDGDSATATLTITIQGTNDAPQVDSGIAVVSEEGLTGGNADTAPGLPNDTTNA
TVATGTITASDVDGDSITMTLGNPGAVLTADGLPVTWSGVGTQTLTGSVGAVPVITITIT
NGGAYTVTLLQSVDHSGINAEDVKNFLVPVNVSDGTATVATSIAVTIEDDSPIAVNDDVT
TVEGASASTGNVLTNDHVGADTPGAVLSVGGNAITLGGSQTIIGAYGTLQLFSDGSYTYT
PKASVPSGSFDSFTYVMRDADNDTASATLKFTFQGDANKPTADNTAAKLDDDGLTGGNAA
STTGDVDANVGDTGAAGPSEASFSGTLPFTFGADGGGSVSFANLNGTTGTVGTDTVSYSW
NGTTNTLTATITTVGGRGTPLFQVVVNPTTGAYTVTLLDNVLHAAGGNENNASVSLNFLV
TDSDYNATTNPTSSAIGQLNISFNDDMPSAFTPAAGSVANNDSPATAFNLNFASVAGADG
VGNALFTITDGALAKDTSGATLRLAGEDLFIFGNGTNVLTAKTADGDIGYTITLQPGTDK
YVFDLHGTITNGSEISISSFSAAKAGNTDYRGLGVDTTDAIDVLFSGRSASGARGSVNTD
SDSIGVDNQSVNPDEAVRIDLIKTLVGNPVTTTGFSYADHQSVISFEQNIAQVGGNPNST
VSIKVTAIDADNDQDLGFSSVTPEAGESFVPIAKVIVTDVSTGNIYSFTGSGTQGSIGVT
FASGSVTITGLQVNDKYEIVGTKGFDAVLVESPHVNNPFDLGVFSVETLNSGTPININHA
IVASDADGDSVNSSVSVTLNPVAVPPVAIDLDGDGLEFVGLSAGVTHDYGHGAVATAWVS
SDDGLLAHATGGGYDIVFADDAPGAASDLEGLRLAYDSNGDGVFDAKDAAFADFGVWQDA
NGNGVVDAGEFKSLTAMGIAAINLTADGKGYTAANGDVTVLGEASFVRTDGTKGTVGDVM
FATGAKASDTSKTDSTASGFNQALVAASLVAAAGAAEHVAEQQPAPAPAETAPPVTETAP
AAMTTTEPAPSQESQPTSLATTDDQATHEQPITSTGHASEEAAPEHATLSGGGEAHAATA
DTAQAPQPDLSGHQGLLAQSIDLPPAFDGNAAAVLAAQQAAPAANAAEVVKEALGTHDAP
HIDALLAALPGGEHPAAPALLSPAGVEVADAGHMAAATAIFEAAMVAHEAMAVAHG
NT seq
9711 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgagcgcgattgggatagcaaagacgccgctgaccatcagcaggcccttcat
ccggaagcggctgctctggccgcaaagggcaaggcggtccatcccggcaagatgcatcgg
gcggaggttgtccgcacggtcgaacccaatcccgacggcaccgtcgtcctgccggccggc
accgacatcaatgggatcgaggtttccggacgcaatctgatcgtccacctgccggacggc
accgatctggtgatcctggacggcgcggtggtcatgccgcgcctggtcgtgggcgatgtc
gaaattccctcggtcaaccttgcggccttgttgatcggggaggagccgcagcctgcagcc
ggtccgccgcgcagctccggcggcaatttcaccggccccgacggcgatgtgggcgatccg
catggcctgggagacctgctgccgccgacggaattgctgtttacccagcccgaggagcgc
gagatcctgcccatcgcgcccaatgaggagccggaagtcaccatcatcacccccgatcaa
cccgctggcgcgactgccgcgaccgcgggtgtgagcgaggctgggcttcccgcgcgcggc
aacgagccggccggttcggccgcggcaggggatggcgagcgcaccacgggcaccatcgcg
atcaccgccagcgacggcctggcgggcgtcaccatcaacggcgtcgcgatcacgacggtc
gggcagacggtcacgacgccgctcggcgtgctgacgatcacctccatcgcggacggttcg
atcggctacagctatgtgctgaccgacaatgtggtcggcacgccgcccgccgaagtcttc
accgtagtcgtaaccgacagcgacggcgaccaggcgagcgccacgcttaccatctcgatc
gcggacgatgcgccgactgccgtcaacgatgccgacagcgtgaccgaagacggcccgctg
gttgcggacggcaatgtcctgaccggcagcggcggcagcgacgcgaacgccaccgatggc
gttgccgacatccagggcgcggatggggcggtcgtgtcgaccacgggcaccttccagggc
acatatggcacgctgacgctgaatgcgtcgggcgcttatagctatacgctggccaacggc
aatgcggcggtgcagttcctggtccccggccagacgctgaccgacagcttcagctacacg
atcaccgatgccgatggcgacacctccacggcaacgctgaccatcaccatcaacggcgcg
gacgacggcatcaccatcaccggcctcaatggcgcgccggggatcgagggcgccgaagtc
gtcctgctggaaaacgacctggcggatggcagctcgcccgacgcggcgggcctcaccaag
accggctctttcggcgtcagcggcgctgacggcctgtcgggcgtcacggtcggcggcgtg
tcggtgctggccaacggcgccttcgtcgccgggcaggtggtgacgacgccggtcggcacg
ctgaccatcaccggcttcaccgcgaccgccacgcagggcggcgtgcccacggccggaacc
ttcacctacagtttcgtgctgaccgacaacagcctgggccatggcgcggcgggcgcggac
agcatcctgcagagcttcgccgtggtggcgaccgaccgcaacgggtcgaccgccaatgcc
acggtcgacgtgcagatcgtcgacgatgtgccgaccgccaacaatgatgtcgatggcgtc
gccgccggcacctatggcccggaaaccggcaatgtcatcaccggggcgggcaccgtctcc
ggcgcggcgggggccgacatcaagggcgcggacggcgcggtcgtttcgaccaccggcacc
ttcgaaggcgcttacggcacgctgacgctgaacgcggacggcagctacagctatgttcgc
gcggctggcacgccgggcggggtgagcgacagcttcagctacacgctgcgcgacggcgat
ggcgacacctccaccgcgacgctgcggatcgacatcgcgaatagcgacgtcatgatcatt
tctatccccaaggtgggcgacggcacgatcgtcgacgaatccggcctgacgaatccgatg
ggctccaatgcgggcagcggcgtcgacaccacggacggcacgatcacctataccgcgccg
gacggtccggcgagcgtcaccatcaacaatattccgatcaccggcgtcgggcaggaaatc
gtcaccgacaagggcatattgacgatcaccggcctcagcgaaggcagcatcgactatagc
tatacgctgaccaccaacacggcgggcgacaatgtgaccgacagcttcgtcgtcaccgtc
accgatgtggacggcgacacggcgaccgacacgctgaccatcaccatcatcgatgatgtg
ccgaccgccgtaagcgatgcggactcggtgcgtgaagacggcccgctggtggccgacggc
aacgtcatcgccggttcgggcggcgcggacgccaacgcgaccgacggcaatgccgacgtg
cagggcgccgacggcgcgcatgtcagcgccattgtctttggcgagactgccggaaccgtc
ggcgcgccgctggccgggctgtacggatcgctcctgatccagtcggacggcagctatgcc
tatacgctgaacaatgaaaatggtgtggtccaggggctggacaagaaccagaccctgacg
gagaccttcacctacacgctgaccgacggcgacggcgataacagcagcgcgaccatcacc
atcaccatccagggcagcgacgatggcgtgaccatcaacggcctggacggcgagggcgcg
gaagaaaccgtcttcgaaaacgacctgccgggcggcagctccgaaaatgctgcggcactg
acccagacgggcagcttcaccctgtccgcgctggacggcgtggcggccatcacggtcggc
ggccagccgatcttcggcgcgaacggcttcattagcggcgttaccctgtccaacgcctat
ggcacgctcagcatcaccggcttcacgccgaccgtgggcgcggacggcgaggtgatcggc
gggaccgtcagctacagctatgtcctcactgacaacacgctgctgcacagcggcgtcaat
gacggcagcctgacggacagcttcgcggtcgtcgtcaccgacaccgacgggtcgaccgac
agcgccagcctggacatccgcgtggtcgacgatgtgccgactgcggtggacgacgtcgcg
ggccagctcaccgaaaatgcggcggtcacgatcgacgtcttcgccaatgacgtggcgggg
gccgacggcgtcaacctcgccagcggcgtggcgctggagaccggcgcggccaagggcacc
gtcgtctatgagggcaatggcgtgttcctctacacccccaatgcgggcgcggagggcagc
gacagcttcacctacaccatcaccgacggcgacggtgacaagtcgaccgccacggtgacg
atcaacctgctccaggattcgacgccgaccgtcagcgtgaccgacatgaccgtgtccgaa
gcgggcctgcccggcggcacgcaggaggcggggaacagcgagacggcgaccggcgccatg
accgtcgcgaccggcggcgacacgctgaccagggtcgaggtgcaggacaagaacggcgca
tgggtcgatgtgaccgcggcgacggcgggaacgccggtggtggtcgcgggcgcggcgggc
gcgctgaccgtcacctccgacggggcggggcattacagctacagctatacgctggcagtc
aacgatccggcccatccggacaatgtcaccagcgacggcgacggcatcagcggcgcggcc
gaccccaaggcgggcgacgccttcgcggtgcgcgtgaccgacagcgacggcgatgtctcg
ccggccgacacgatcaacgtgaccgtgctggacgacgcgccggtcgccacggccgacagc
ggttcggtgagcgagggcgactcgctgatcgtcgccacggccgacggcgtgctgcacaat
gaccagccgggcgcagacggctatgcgccgggcgtggtcggcgttgccaagggcagcgat
ccgtccagccccgtcagcggtcaggtcggcacggcagtcgccggcgattacggcacgctg
acgctctttgccgacggcagctaccgctatgacgcgactcccaacgccatctccgccgac
aagcaggatgtgttcgtctacaccatccgcgatggggacggcgacctggcgacgtcgacg
ctgaccatcaacgtcgccaatgtcgcgctggcggcggacaaccagacgaagacggtcttc
gaggcggcgctggacaccggcatcagcggcgacgacatcgcggcgggcagcgtcaccggc
agcacgccgggcgagcccaccgaaaccgcgaccggccagctcaacgtcgtgggcgcggtc
agctacacgctgaccagctccgcaaccggcagccatggccagattcagttgaacgccaat
ggcagctacacctacacgctgacctcgccggtggacggcccgacggcgaatgacggtccg
ctgacattcgcgggcgcggaggtcttcacctatcaggcggtcgacggctccggcaatatc
gccaacggcacgatcaccatcgacgtggtggacgatgtcccgaccgcggcggacgacgct
ggcctcagcgtggcggaggatggcgccgacatcggcggcaatgtcctgaccaacgacacg
cccggcgcggacggcgcgaccctgacctccgtcaccatcggcggcgtcaccacggcgatc
aacgccgtgggcacgaccaatgtcagcggggccttcggcgcctataccttcacggcggcg
ggtgcgtggaccttcaacccgtcgaccaacctcaacaacgccagcggcgtcagcgcgggc
ttctcctacgtcatcaccgacggcgatggggaccagtcgaccgccgtgcagccgatcacg
gtcacggacggggctaaccccatcgcgggcgccccgatcagcctggcgctggacgaccag
aatctggcgggcggcacgacgcagggcaatccggactcggccagcggcgccatcaccttc
acgcccggttcggacgccatcacctccatcgtgttcggcggcaccggcagcctgacgggt
gacctgacctggctgcgggtgtccgacaccaagatcaccggctcggacgaacgcggcgta
gtggtgacgctggacctgtcgctcgtcggcaatgtcgcgaccgtgacggctacgctgaac
gacaattacgacacccatcccggcatcgacgccgacgatctggtggcgctgggatcggtt
caggtgatcgcgcaggataccgacggcgacaccgccgccggcaccgtgtcggtcagcgtt
tccgacgaccggccggtggtcagcgccaatccggtggctcaactggacgacgacgcgctg
ggcggcaatgccagtggcacgggtgacgatgcgaacagcctgaacgccactggtacgctg
gcgcacgactatcgcgccgacggtccaggcggcatcgccctgctcgccaccggcgcgccg
gtcggcttcacctatgaaagcaacggcaccgtgctgctggtgaagcagaatggcacgacc
gtcctgacggtgacgctgaccgatccagtcgcgggaacctattctgtggtccagaacgct
gccatcgtccacccggcgggcggtgacgagaataatgtcagcttcgacatcgcctatcgg
gtgacggatgccgacaacgacactgccaccggcacgctgactattaatgtcgacgacgac
acgcctgtcgccgccaacgacaccgatgtcgtcaaggaagacgtcacgctaaccgccagc
ggcaatgtgctgaccggcgtgggcggcgacggcaatccggcgggcgcggactcgctgggg
gccgacggtccggcggcgggcggcgcggtgaccgcggtcaccggcggtacggtcggcggt
aatgccgtcggcagctatggcaccctcgtcctcaatgcttcgggtggctatacatacacg
ctgaataacggcctgcctgcggtccagcatctggacgacggccagacgctgagcgacatc
ttcacatacacgatcacggacggcgatggcgacagcgccaccgccaccctgacgatcacc
atccagggcaccaatgacgcgccgcaggtcgacagcggcatcgccgtcgtctccgaggag
gggctgaccggcggcaacgccgacaccgcgcccggcctgccgaacgacaccaccaatgcg
acggtggcgaccggcacgatcaccgcgagcgacgtcgacggcgacagcatcaccatgacg
ctgggcaatccgggcgctgtgctgactgccgatggcctgcccgtcacctggagcggcgtc
ggcacgcagacgctgaccggttcggtcggcgcggtgccggtgatcacgatcactatcacc
aacggcggcgcctatacggtgacgctgctgcaatcggtcgatcacagcggcatcaatgcc
gaggatgtgaagaacttcctcgtccccgtgaacgtcagcgacggcaccgccacggtcgcc
accagcattgccgtcacgatagaagatgacagcccgatcgccgtcaacgacgatgtgacg
accgtcgaaggggcgtcggcctcgaccggcaatgtgctgacgaacgatcatgtcggggcg
gatacgcccggcgcggtcctgtcggtgggcggcaatgccatcacactgggcggcagccag
acgatcatcggcgcctatggcacgttgcagctcttctccgacggcagctacacctatacg
cccaaggcttcggtgccttcgggatcgttcgacagcttcacctatgtcatgcgcgacgcc
gacaatgacacggccagcgccacgctgaagttcaccttccagggcgacgcgaacaagccg
acggcggacaacaccgccgccaagctggacgatgacggcctgaccggcggcaacgcggcc
agcacgaccggcgacgtcgacgccaatgtgggcgacaccggcgcggctgggcccagcgag
gccagcttcagcggcaccttgcccttcaccttcggcgccgacggcggcggcagcgtgagc
ttcgccaatctgaacggtacgaccggcacggttggcacggacaccgtatcctatagctgg
aacggcacgaccaacacgctgaccgcgaccatcacgacggtcggtggccgcggcacgccg
ctgttccaggtcgtcgtcaatccgacgaccggcgcctatacggtgacgttgctcgacaat
gtgctgcacgcagcgggcgggaatgagaataacgcctccgtcagcctcaatttcctcgtc
accgacagcgactataacgcgacgaccaacccgacctcctcggccatcgggcagctcaac
atctcgttcaacgacgacatgcccagcgccttcacgccggcggctggatcggtggcgaac
aatgacagtcccgccacggccttcaacctcaacttcgccagcgtggcgggcgccgatggc
gtcggcaatgcgctgttcaccatcaccgacggcgcgctcgccaaggataccagcggcgcc
acgctgcggctggccggcgaagacctgttcattttcggcaacggcacgaatgtgctgacg
gcgaagacggcggacggagacatcggctacaccatcacgctccagccggggacggacaaa
tatgtgttcgaccttcacgggacgatcaccaacggcagcgagatttcgatcagcagcttc
agcgcggcgaaggcgggcaacaccgactatcgcggcctgggcgtcgataccaccgatgcc
atcgacgtgctgttttccggccgcagcgcttcgggcgcccggggatcggtcaacaccgac
agcgactccatcggcgtcgacaaccagtcggtcaatcccgacgaggcggtacgcatcgat
ctcatcaagacgctggtcggcaatcccgtcaccaccaccggcttctcctatgccgatcac
cagagcgtgatcagcttcgagcagaatatcgctcaggtcggcggcaatcccaacagcacc
gtgtcgatcaaggtcacggccatcgatgccgacaacgatcaggatctgggcttctcttcc
gtgacgccggaagcgggcgaaagcttcgtcccgatcgccaaggtaatcgtcacggatgtg
agcaccgggaatatctacagcttcaccggatcggggacgcagggcagcatcggcgtgacc
ttcgcttccggcagcgtcaccatcaccggcctgcaggtgaacgacaaatatgagattgtc
ggcaccaagggcttcgatgcggtgctggtggaatcgccgcacgtcaacaatccgttcgac
ctcggcgtcttctcggtcgagacgctgaatagcggcacgccaatcaacatcaaccatgcc
atcgtcgcctcggatgcagacggtgacagcgtcaacagttcggtcagcgtcacgctgaac
ccggttgccgttcccccggttgccatcgacctggacggcgacgggctggaatttgtcggt
ctgtcggcgggcgtcacccacgactatggccatggcgcggttgcgaccgcctgggtttcc
tccgacgatgggctgctcgcccatgcgacgggcggcggttacgacatcgtctttgccgac
gatgcgcccggcgccgcgagcgatctggagggcctgcgccttgcctatgacagcaacggc
gacggcgtattcgatgccaaggacgcggccttcgctgatttcggcgtctggcaggatgcg
aacggcaacggcgtggtcgacgcgggcgagttcaagtcgctcaccgctatgggcatcgcc
gcgatcaatctgaccgcggatggcaagggctataccgccgccaatggcgacgtcaccgtg
ctgggcgaggcgagcttcgtccgcaccgacggcaccaaggggacggtcggggacgtcatg
ttcgcgaccggcgccaaggcaagcgacacgagcaagacggatagcacggccagtggcttc
aaccaggcgctggtagccgccagcctggtcgcggcggcgggtgcggccgagcatgtggcc
gaacagcagcctgcacccgctccggcggaaaccgctccgcccgttacggagaccgcaccg
gctgccatgaccacgaccgaaccggcgccttcgcaggagagccaaccgacttcgctcgcc
acgacggacgatcaggcgacgcatgagcagcccattacgtccaccggccatgccagcgag
gaggctgcgccggagcatgccaccctgtccggcggcggcgaagcgcatgcggcgacagcc
gatacggcccaggctccgcagcccgacctcagcggccatcagggtctgctggcccagtcg
atcgacctgccgcctgccttcgacggcaacgcggcggcggttctggccgcgcagcaggcc
gctccggcggccaatgcggccgaagtcgtgaaggaagcgctgggcacccatgacgcgccg
catatcgacgcgctgctggctgccctgccgggtggcgagcatccggcggcgccggccttg
ctgagcccggctggcgtcgaagtggcggacgcagggcacatggccgcggccaccgccatc
ttcgaagcggcgatggtcgcgcatgaagcgatggcggtcgcccatggctga
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integrated database retrieval system
