Sphingobium sp. RSMS: EGM87_04320
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Entry
EGM87_04320 CDS
T10811
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
sprs Sphingobium sp. RSMS
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sprs03032
]
EGM87_04320
03036 Chromosome and associated proteins [BR:
sprs03036
]
EGM87_04320
03400 DNA repair and recombination proteins [BR:
sprs03400
]
EGM87_04320
DNA replication proteins [BR:
sprs03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
EGM87_04320
Chromosome and associated proteins [BR:
sprs03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
EGM87_04320
DNA repair and recombination proteins [BR:
sprs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
EGM87_04320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_bac_2
Utp8_C
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
UXC91712
LinkDB
All DBs
Position
1:complement(935480..935770)
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AA seq
96 aa
AA seq
DB search
MIRSELIQKLAEENPNLNLQEVERIVDLFFKEIVDRLSSGGRVELRGFGAFTTRARDART
GRNPRTGEQVPVDAKRVPYFKPGKEMRERLNGKAAH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgatacgctcggaactgattcagaaattggctgaggaaaatccaaacctcaacctccag
gaagtggaaaggatcgtcgatcttttcttcaaggaaatagtcgaccgcctctccagcgga
gggcgagtggaacttcggggcttcggcgcctttacgacacgggcgcgcgacgcgcgtacc
ggtcgcaatccgcgcaccggtgaacaggtgccggtggatgccaagcgggttccctatttc
aagcccggaaaggaaatgcgggaacggctgaacggcaaagctgcccactga
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