Sphingobium sp. RSMS: EGM87_05885
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Entry
EGM87_05885 CDS
T10811
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
sprs Sphingobium sp. RSMS
Pathway
sprs02024
Quorum sensing
sprs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGM87_05885 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
EGM87_05885 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprs03019
]
EGM87_05885 (hfq)
03036 Chromosome and associated proteins [BR:
sprs03036
]
EGM87_05885 (hfq)
Messenger RNA biogenesis [BR:
sprs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
EGM87_05885 (hfq)
Chromosome and associated proteins [BR:
sprs03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
EGM87_05885 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
UXC92004
LinkDB
All DBs
Position
1:complement(1268495..1268977)
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AA seq
160 aa
AA seq
DB search
MADKVNNLQDIFLNSLRKSKTPVTMFLVKGVKLQGIITWFDNFSVLLRRDGQSQLVYKHA
ISTVMPAQSMDLTELRKASDGNGKSKLLQEIFLSAVRKSGSPVTMFLVNGVMLQGEIAAF
DLFCMLLERDGMVQLVYKHAISTVQPLHALDLTGEGEGED
NT seq
483 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaagtgaacaaccttcaagacatcttcctgaacagcctgcgcaagagcaag
acgcccgtgaccatgttcctggtcaagggtgtgaagctgcagggcatcatcacctggttc
gacaatttttccgtgctgctgcggcgggacggacagtcgcagctggtgtacaagcatgcg
atttcgaccgtcatgcccgcgcaatccatggatctgaccgaattgcggaaggccagcgac
ggcaatggcaagtcgaagctgctccaggaaatcttcctgagcgcggtgcgcaagtccggc
agcccggtgacgatgttcctggtgaacggcgtcatgttgcagggcgaaatcgccgccttc
gacctcttctgcatgctgctggagcgggacggcatggtccagcttgtctacaagcatgcg
atttccaccgtgcagccgctgcacgcgctggacctcaccggcgagggtgagggcgaggat
tga
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