Sphingobium sp. RSMS: EGM87_07420
Help
Entry
EGM87_07420 CDS
T10811
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sprs Sphingobium sp. RSMS
Pathway
sprs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGM87_07420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprs03019
]
EGM87_07420
Enzymes [BR:
sprs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGM87_07420
Messenger RNA biogenesis [BR:
sprs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGM87_07420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
MRP-L28
Motif
Other DBs
NCBI-ProteinID:
UXC92289
LinkDB
All DBs
Position
1:complement(1604442..1605827)
Genome browser
AA seq
461 aa
AA seq
DB search
MQFTDLGLAEPILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSL
DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRA
LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKER
QNLFFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQALLNLTIQ
KEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVA
TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIE
RTTKVKLDVVPLPENFVEVVRNLPKAAPQRKGREQTPEQKTRRADGQRRYQDQQKQQRGN
TERAHRPDGEAAKPAKKNFRRRRGGSNVGAHKGAVQKTGGR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaccgaccttggccttgccgagccgatcctgaaggcgctggccgccaagaaa
tatgcctcgccgacgccgatccaggcgcaggccattcccgtgctgctgaagggcaaggac
ctgtgcggcatcgcgcagaccggcaccggcaagaccgctgccttcgcgctgcccagcctt
gaccatttcgcccgcaatcccaagccgacgccgctccagggctgccgcatgctggtgctg
tcgccgacgcgcgaactcgccgcgcagatcgcgcagagcttccgcgactatggccgcttc
ctgaagctgtccgtggaggtggtgttcggcggcgtgccgatcaaccggcagatccgggcg
ctggggcgcggcgtcgacatcgtcgtggcgacgccgggccgtctgctcgacctgatcgac
cagcgcgccttcaccatcaaggacaccgagatattcgtcctcgacgaagccgaccagatg
atggacatgggcttcatccacccgttgaagcgcatcgccaagctgctgccgaaggagcgg
cagaacctcttcttctccgccaccatgccgggcgagatcgaggcgctggccagccagttc
ctgcacgatccggtcaaggtgagcgtcgcgccgcagtcgaccacggcggagcgggtccgg
cagcaggcgaccttcgtcaaccagatggagaagcaggcgctgctcaacctgacgatccag
aaggaagacatcgaccgcgcgctgatcttcacccggaccaagcatggcgccgaccgggtc
gtgcgctttctggagggcgcgggcatccaggccgtggcgatccatggcaacaagagccag
gcgcagcggaccaccgcgctccaggccttccgccatggccatgtgaagctgctggtggcg
accgacatcgccgcgcgcggcatcgacgtgtcgggcgtcagccatgtcatcaatttcgaa
ctgcccaatgtgccggaacaatatgtccaccgcatcggccgcacggcgcgggcaggggcg
gagggcgttgcgatcagcttcgtggcggacgacgagcggccttatctgaaggccatcgag
cggacgaccaaggtgaagctggacgtcgtcccgctgccggagaatttcgtcgaggtggtg
cgcaatcttcccaaggccgcgccgcagcgcaagggtcgggagcagaccccggagcagaag
acgcggcgcgccgacgggcaacgccgctatcaggaccagcagaagcagcagcgcggcaat
accgaacgggcgcatcggccggatggcgaagctgcgaagccggcaaagaagaatttccgg
cgccgtcgcggcggcagcaatgtcggcgcgcataagggcgcggtgcagaagaccggcggg
cggtaa
DBGET
integrated database retrieval system
