Sphingobium sp. RSMS: EGM87_07580
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Entry
EGM87_07580 CDS
T10811
Name
(GenBank) 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
sprs Sphingobium sp. RSMS
Pathway
sprs00071
Fatty acid degradation
sprs00280
Valine, leucine and isoleucine degradation
sprs00310
Lysine degradation
sprs00362
Benzoate degradation
sprs00380
Tryptophan metabolism
sprs00410
beta-Alanine metabolism
sprs00640
Propanoate metabolism
sprs00650
Butanoate metabolism
sprs00907
Pinene, camphor and geraniol degradation
sprs00930
Caprolactam degradation
sprs01100
Metabolic pathways
sprs01110
Biosynthesis of secondary metabolites
sprs01120
Microbial metabolism in diverse environments
sprs01200
Carbon metabolism
sprs01212
Fatty acid metabolism
Module
sprs_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
EGM87_07580
00650 Butanoate metabolism
EGM87_07580
09103 Lipid metabolism
00071 Fatty acid degradation
EGM87_07580
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
EGM87_07580
00310 Lysine degradation
EGM87_07580
00380 Tryptophan metabolism
EGM87_07580
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
EGM87_07580
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
EGM87_07580
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
EGM87_07580
00930 Caprolactam degradation
EGM87_07580
Enzymes [BR:
sprs01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
EGM87_07580
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
EGM87_07580
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
EGM87_07580
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
NAD_Gly3P_dh_N
F420_oxidored
DAO
Pyr_redox_2
2-Hacid_dh_C
UDPG_MGDP_dh_N
Sacchrp_dh_NADP
XdhC_C
NAD_binding_8
AlaDh_PNT_C
Shikimate_DH
LSDAT_euk
Motif
Other DBs
NCBI-ProteinID:
UXC92319
LinkDB
All DBs
Position
1:1634535..1636712
Genome browser
AA seq
725 aa
AA seq
DB search
MQTINFDIDADGIATLTIDVPDQSMNVIGPDFLADLDAAITRISSEEAIKGAVIASGKSS
GFMAGMDLKYFGSMLVSENGKRPSPAAIFDKVFVLNQLFRRLETCGKPVACAIEGTCVGG
GFELALACHRRIVGDSPKTQLGLPEILIGLFPGGGGSQRLPRIMGVQASLMYMLQGKLFR
PADAAMMKVVDQVVPQGTAVEAAREWVKANPNAFVQPWDVKGFKFPGGAGGFNPAFVQTM
AGALPMTLKQTQRNMNAPIALLSAVYEGAFLPIDRAIRVESKYFAKVAADPQAANMIRSL
FVNKQAAERGARRPKDQPKAPTKKLAMLGAGMMGAGIATVAAQAGIEVVLFDRDQAYAEK
GKAHVEEVLKKRLGRGMTPEKMAETLARVTPTTDYAALAGADFVIEAVFEDVAIKAEVTK
KVEEVLGADTIFGSNTSTLPITKLAKAWSKPENFIGIHFFSPVEKMPLVEIILGKETGPA
AIAKALDFVAQIRKTPIVVNDSRGFYTSRCFGTYVQEGVEMVAEGINPALIENAGRQLGM
PVGPLAVGDEVSIELGHKIVVAAQKELGDAYVAQPSDAVMARMVELGRLGRKSAKGWYDY
PEGGKKHLWAGLEEMFPRAAVQPDVEEVKERLLYRQLIECARCFEEGVLETPEDGDIGAI
FGWGFAPYTGGPFSHMDTVGIGHVVAVLERLAATHGDRFAPTVQLQDMAASGATFYRPVS
SRAAA
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccatcaatttcgacatcgacgccgacggcatcgccaccctcaccattgatgtt
cccgatcagtcgatgaacgtcatcggcccggatttcctggccgatctggacgcggcgatc
acgcgcatttcctccgaggaggcgatcaagggcgcggtcatcgcgtcgggcaagagcagc
ggcttcatggcgggcatggacctcaaatatttcgggtcgatgctggtcagcgagaatggg
aaacgcccctcccccgccgcgatcttcgacaaggttttcgtgctgaaccagttgttccgg
cggctggagacctgcggcaagccggtcgcctgcgccatcgagggcacctgcgtcggcggc
gggttcgaactggcgctggcctgtcatcgccggatcgtcggggacagcccgaagacgcag
ttgggcctgcccgaaatcctgatcggcctgttccccggcggcggcgggtcgcagcgcctg
ccgcgcatcatgggggtgcaggcgtcgctgatgtatatgttgcagggcaagctgttccgt
cccgccgacgcggcgatgatgaaggtggtcgatcaggtcgtgccgcagggcacggcggtc
gaagccgcgcgcgaatgggtgaaggccaatcccaacgccttcgtgcagccctgggacgtc
aagggcttcaaattccccggcggcgcgggcggcttcaatccggccttcgtccagaccatg
gcgggcgccctgccgatgacgctcaagcagacccagcgcaacatgaacgcgccgatcgcg
ctgctttcggcggtctatgagggggctttcctgcccatcgaccgggcgatccgggtggag
agcaaatatttcgccaaggtcgcggccgacccgcaggcggcgaacatgatccgcagcctg
ttcgtcaacaagcaggcggccgagcgcggcgcaaggcggcccaaggaccagcccaaggcg
ccgacgaagaagctggccatgctgggcgcgggcatgatgggcgcagggatagccaccgtg
gccgcgcaggcggggatcgaggtggtgctgttcgaccgcgatcaggcctatgccgaaaag
ggcaaggcgcatgtcgaggaggtgctgaagaagcggctgggccggggcatgacgccggag
aagatggcggagacgctggcccgcgtgacgccgacgacggattatgccgcgctggccgga
gcggacttcgtgatcgaggcggtgttcgaggatgtcgcgatcaaggccgaagtgaccaag
aaggtcgaggaggtgctgggcgcggatacgatcttcgggtcgaacacctccactttgccg
atcaccaagctggcgaaggcgtggagcaagccggagaatttcatcggcatccacttcttc
tcgccggtcgagaagatgccgctggtggagatcatcctgggcaaggaaaccgggccggcc
gccatcgccaaggcgctggatttcgtggcccagatcaggaagacgccgatcgtcgtcaat
gactcgcgcggcttctatacctcgcgctgcttcggcacctatgtgcaggagggcgtggag
atggtcgcggaggggatcaatcccgcgctgatcgaaaatgccgggcggcaactgggcatg
ccggtggggccgctggcggtgggcgacgaggtttccatcgagctgggccacaagatcgtc
gtcgccgcgcagaaggagctgggcgacgcctatgtcgcgcagccgtccgacgcggtgatg
gcgcggatggtcgaactggggcggctggggcggaaaagcgccaagggctggtatgactat
cccgagggcgggaagaagcatctctgggccggtctggaggagatgttcccgcgcgccgcc
gtgcagcccgatgtcgaggaagtgaaggagcggctgctctaccgccagttgatcgaatgc
gcgcgctgcttcgaggaaggcgtgctggagacgccggaggatggcgacatcggggcgata
ttcggctggggcttcgcgccctataccggcggaccgttcagccatatggacacggtcggc
atcggccatgtcgtcgcggtgctggagcggctggcggcgacgcatggcgatcgcttcgcg
cccacggtccagttgcaggacatggcggcaagcggcgcgactttctatcgccccgtttcg
tcccgcgccgcggcatga
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