Sphingobium sp. RSMS: EGM87_07875
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Entry
EGM87_07875 CDS
T10811
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sprs Sphingobium sp. RSMS
Pathway
sprs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGM87_07875 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprs03019
]
EGM87_07875 (rnr)
03016 Transfer RNA biogenesis [BR:
sprs03016
]
EGM87_07875 (rnr)
Enzymes [BR:
sprs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EGM87_07875 (rnr)
Messenger RNA biogenesis [BR:
sprs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EGM87_07875 (rnr)
Transfer RNA biogenesis [BR:
sprs03016
]
Prokaryotic type
tRNA degradation factors
EGM87_07875 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
WHD_RNase_R
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
UXC92373
LinkDB
All DBs
Position
1:1693180..1695489
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AA seq
769 aa
AA seq
DB search
MASTEKKKKSDSARTKVRPAGFPTREQVMDFIATSDQPAGKREIAKAFGLKGQEKIALKA
LLKDMADEGLIDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRLRV
MERGKRGALTIGDRILARTEEAGRGWVAHPMKKLAKASEELLGVVEEADGGKLWLRPVDK
RIRRDTPISDAGTAKKGDLVLAEPVGRPPRITARVTDILGDPFAPRSFSLIAIHKHGIPH
VFSERVEEEAVTASSLALHEEKREDLRHLPIVAIDPVDARDHDDAVWAAPDDDPANEGGY
KAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGEDRAAM
ACHLVLDAAGKVKSWRFSRAVIRVAAVLAYEDAQAAIDGEKPLDLLEPALKPLWACWALL
RKARDKREPLALDLPERRVVLDEYGKIVSVAVRERLDAHMLIEDYMIAANVAAAKALEAK
KAPVMYRVHEPPSRDKLVALKDYLATFDIEFALGQVVKPATFNRLIARIGEAEEKPQIME
QILRSQTQAYYAPSNMGHFGLALGSYAHFTSPIRRYADLLVHRALVGAYGLELPAPKGDI
PDRSSLSGEDMENMGRVGEMISQHERRAMEAERETIDRYVAAFLAAHVGDLVEARITGVQ
SFGFFATVEGLGGDGLVPVSTLGDERFFFDEAGRALEGVESGDRYTVGQRLQLRLAEADP
INGSLRFELPDALPQRPSFKKDRVRPGSVRRGRPTNIRHIGSKRGKHRR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaccgaaaagaagaagaaatccgactccgcccggaccaaggtgcggcccgca
ggtttcccgacgcgcgagcaggtgatggatttcatcgccacgtccgaccagccggccgga
aagcgggagatcgcgaaggccttcggtctcaaggggcaggagaagatcgcgctcaaggcg
ctgctcaaggacatggcggacgaagggctgatcgacatcggcccggcgcgggccttccac
aagatgggcggcgtgcccaaggtcacggtgctgcggatcgtggatgtcgacgacaccacc
ctgatcgccacgccggaacgctgggaggcggagggacagcccgcgccccggctgcgcgtc
atggagcggggcaagcgcggcgcgctgacgatcggcgaccgcatattggcgcggacggag
gaagcggggcgcggctgggtcgcgcatccgatgaagaagcttgccaaggcgagcgaggaa
ttgctgggcgtggtcgaggaagcggatggcggcaagttgtggctgcgcccggtcgacaag
cgcatccggcgggacaccccgatttcggacgccggcacggcgaagaagggcgatctggtg
ctggccgagccggtggggcgcccgccccggatcacggcgcgggtgacggacatattgggc
gatcccttcgcgccgcgcagtttcagcctgatcgccatccacaagcatggcattccccac
gtcttttccgagcgggtcgaggaggaggcggtgacggcttccagcctcgccttgcatgag
gagaagcgggaggatttgcggcacctgcccatcgtcgccatcgatccggtcgatgcgcgg
gaccatgacgatgcggtctgggccgcgccggatgatgatccggccaatgagggcggctac
aaggcgatcgtcgcgatcgcggacgtcagctattatgtgcgtccgggcagcgcgctggac
cgcgaggcgaggaagcgcgggaacagcgtctatttccccgatctggtcgtgccgatgctg
ccccaccagctttcttccgacatgtgttcgctgcgggcgggcgaggatcgtgcggccatg
gcctgtcacctcgtgctggatgcggcgggcaaggtgaagagctggcgcttttcccgcgcg
gtgatccgggtggcggcggtgctggcctatgaggatgcgcaggcggcaatcgacggcgaa
aagcccctcgacctgttggaaccggcattaaagcccctctgggcctgctgggcgctgctg
cgcaaggcgcgggacaagcgggagccgctggcgctggacctgccggagcggcgggtggtg
ctggacgaatatggcaagatcgtcagcgtggcggtgcgcgagcggctggacgcgcatatg
ctgatcgaggattatatgatcgccgccaatgtcgcggcggcaaaggcgctggaggccaag
aaggcgccggtcatgtaccgtgtccatgagccgccgagtcgggacaagctggtggcgctg
aaggattatctggcgaccttcgacatcgaattcgccctggggcaggtggtgaagcccgcc
accttcaaccggctgatcgcgcggatcggggaagcggaggagaagccccagatcatggag
cagatcctgcgcagccagacacaggcctattatgcgccgtccaatatggggcatttcggg
ctggcgctggggtcctatgcgcatttcacgtcgccgatccggcgctatgcggacctgctg
gtgcatcgggcgctggtgggcgcctatgggctggaactgccggcgcccaagggggatatt
cccgaccgatcatcgctgagcggcgaggatatggagaatatgggccgcgtgggcgagatg
atcagccagcatgagcgccgcgccatggaggcggagcgggagaccatcgaccgctatgtc
gcggcgttcctggcggcgcatgtgggcgatctggtggaggcgcggatcaccggggtgcag
agcttcggcttcttcgccacggtcgaggggctgggcggcgacgggctggtgccggtgtcg
acgctgggcgacgagcgtttcttcttcgacgaagccgggcgggcgctggaaggcgtggag
agcggggaccgctatacggtcgggcagcggctgcaattgcggctggccgaagcggacccg
atcaacggctcgttgcgcttcgaactgcccgacgccctgccccagcggccgagcttcaag
aaggaccgcgtgcggcccggcagcgtcaggcgcgggcggccgaccaatatccgccacatc
ggatcgaagcggggcaagcatcggcggtga
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