Sphingobium sp. RSMS: EGM87_09745
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Entry
EGM87_09745 CDS
T10811
Symbol
sdhA
Name
(GenBank) succinate dehydrogenase flavoprotein subunit
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
sprs Sphingobium sp. RSMS
Pathway
sprs00020
Citrate cycle (TCA cycle)
sprs00190
Oxidative phosphorylation
sprs00650
Butanoate metabolism
sprs00720
Other carbon fixation pathways
sprs01100
Metabolic pathways
sprs01110
Biosynthesis of secondary metabolites
sprs01120
Microbial metabolism in diverse environments
sprs01200
Carbon metabolism
Module
sprs_M00009
Citrate cycle (TCA cycle, Krebs cycle)
sprs_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sprs_M00149
Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
EGM87_09745 (sdhA)
00650 Butanoate metabolism
EGM87_09745 (sdhA)
09102 Energy metabolism
00190 Oxidative phosphorylation
EGM87_09745 (sdhA)
00720 Other carbon fixation pathways
EGM87_09745 (sdhA)
Enzymes [BR:
sprs01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
EGM87_09745 (sdhA)
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
GIDA
Pyr_redox_2
Thi4
DAO
Motif
Other DBs
NCBI-ProteinID:
UXC89362
LinkDB
All DBs
Position
1:complement(2037472..2039286)
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AA seq
604 aa
AA seq
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MSEAYKIIDHTYDTVVVGAGGSGLRATMGSAEAGLKTACITKLFPTRSHTVAAQGGIAAS
LGNNSPDHWTWHMYDTVKGSDWLGDQDAIEYMVREAPAAVIELEHAGVPFSRNDNGTIYQ
RPFGGHMQNMGAGPPVQRTCAAADRTGHAMLHALYQQSLKYDADFYIEYFAIDLIMEDGP
NGKECRGVIAICMEDGSIHRFRSKAVVLATGGYGRAYFSATSAHSCTGDGGGMVLRAGLP
LQDLEFVQFHPTGIYGAGVLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRS
MAMEMREGRGVGPNKDHIYLHLDHIDPKVLAERLPGITESGKIFAGVDLTRQPLPVTPTV
HYNMGGIPCNYHGQVVTKVGDDPEVVVPGLYAVGEAACVSVHGANRLGSNSLIDLVVFGR
ATGLHLKETIKPNGSHRPLPKDAADLALGRLDHYRNAKGGSPTAKIRLEMQHTMQKHAAV
FRDSALLAEGVAKMAEVNGRLQDVAVSDRSLIWNTDLIETLELDNLMSQAVCTMVSAENR
KESRGAHAHEDFPNRDDAEWMKHTVSWFEGWGGKGGKVTLDYRPVHDYTLTDEAEYIKPK
ARVY
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagcctacaagatcatcgaccacacctatgacacggtcgtcgtgggtgccggc
ggctccggcctgcgcgccaccatgggcagcgcggaagcgggcctgaagaccgcctgcatc
accaagctgttcccgacccgcagccatacggtggcggcgcagggcggcatcgcggcgagc
cttggcaacaactcgcccgaccactggacctggcacatgtacgacaccgtcaaggggtcg
gactggctgggcgaccaggacgccatcgaatatatggtgcgcgaggcgccggccgccgtg
atcgagctggagcatgcgggcgttccgttcagccgtaacgacaatggcaccatctaccag
cgtcccttcggcggccacatgcagaatatgggcgccggcccgccggtgcagcgcacctgc
gccgccgccgaccgtaccggccacgccatgctgcacgcgctctatcagcagagcctgaag
tatgacgcggacttctacatcgaatatttcgccatcgacctgatcatggaagacggcccg
aacggcaaggaatgccggggcgtcatcgccatctgcatggaagacggttcgatccatcgc
ttccgcagcaaggcggtcgtgctggcgacgggcggttacggccgcgcttacttctccgcc
acttcggcgcatagctgcaccggcgacggcggcggcatggtgctgcgcgcgggcctgcct
ttgcaggatctggaattcgtgcagttccacccgaccggcatctacggcgcgggcgtgctc
atcacggaaggcgcgcggggcgagggcggttacctcaccaattccgagggcgagcgtttc
atggagcgctatgcgccttccgcgaaggatctggcgtcgcgcgacgtcgtgtcgcgctcc
atggccatggaaatgcgcgaagggcgcggcgtgggtcctaacaaggaccatatctacctg
cacctcgatcatatcgatcccaaggtgctggcggaacgcttgccgggcatcaccgaaagc
ggcaagatcttcgccggtgtcgacctgacccgccagccgctgccggtgacgccgaccgtc
cactataatatgggcggcattccctgcaattatcatgggcaggtggtgacgaaggtcggt
gacgatcccgaagtcgtggtgccgggcctctatgccgtgggtgaagcggcctgcgtttcg
gtccatggcgcgaaccgcctgggttccaactcgttgatcgatctcgtcgtcttcggccgc
gcgaccggcttgcacctcaaggaaacgatcaagcccaacggctcgcatcgtccgctgccc
aaggacgcggccgacttggcgctgggccgcctcgatcactatcgcaatgcaaagggcggt
tcgcccacggcgaagatccgcctggaaatgcagcacaccatgcagaagcacgccgccgtg
ttccgcgacagcgcgctgctggcggagggcgtcgcgaagatggcagaggtcaatggccgc
ttgcaggacgtcgcggtttcggaccgctcgctgatctggaacaccgacctgatcgagacg
ctggaactggacaatctgatgtcccaggctgtctgcaccatggtcagcgcggaaaaccgc
aaggaaagccgcggcgcccatgcgcatgaggacttcccgaaccgcgacgacgccgaatgg
atgaagcacaccgtaagctggttcgagggctggggcggcaagggcggcaaggtgacgctc
gactaccgtccggtgcacgattacacgctcacggacgaggcggaatatatcaagcccaag
gcgcgcgtttactaa
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