KEGG   Sphingobium sp. RSMS: EGM87_10710
Entry
EGM87_10710       CDS       T10811                                 
Symbol
gcvPA
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase subunit GcvPA
  KO
K00282  glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
Organism
sprs  Sphingobium sp. RSMS
Pathway
sprs00260  Glycine, serine and threonine metabolism
sprs00630  Glyoxylate and dicarboxylate metabolism
sprs00670  One carbon pool by folate
sprs00785  Lipoic acid metabolism
sprs01100  Metabolic pathways
sprs01110  Biosynthesis of secondary metabolites
sprs01200  Carbon metabolism
Module
sprs_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sprs00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    EGM87_10710 (gcvPA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    EGM87_10710 (gcvPA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    EGM87_10710 (gcvPA)
   00670 One carbon pool by folate
    EGM87_10710 (gcvPA)
Enzymes [BR:sprs01000]
 1. Oxidoreductases
  1.4  Acting on the CH-NH2 group of donors
   1.4.4  With a disulfide as acceptor
    1.4.4.2  glycine dehydrogenase (aminomethyl-transferring)
     EGM87_10710 (gcvPA)
SSDB
Motif
Pfam: GDC-P Aminotran_5 Cys_Met_Meta_PP
Other DBs
NCBI-ProteinID: UXC89549
LinkDB
Position
1:complement(2230718..2232076)
AA seq 452 aa
MRYLPLTDTDRQDMLSVIGASSIDDLFVDVPAEARLSDKIAGLPDHASELAVERHMAALA
RKNLSAGEAPFFLGAGAYRHHVPASVDHLIQRGEFLTAYTPYQPEIAQGTLQVLFEFQTQ
VARLLGCDVANASMYDGSTACWEAIGMARRITRRGKAILSSGLHPHYVSVANTMAKFTGD
ALVHQAPTLDAATDTDALIAGIDKDTSCVVVQYPDILGRIADLTPLADAAHAAGALLVAV
VTEPVALGAIRAPGHMDADIVVGEGQSIGVGLQFGGPYLGLFACKQKYVRQMPGRLCGET
VDAAGKRGFVLTLSTREQHIRREKATSNICTNSGLCALAFSIHMTLLGERGLRELAALNH
GLAVQAADRLAQVPGVTLLNDSFFNEFTLILSKDAREVVRNLADKGVLGGVSLGRLFPDA
PAIGNGLVVAVTETVTVEDIEIFAKALEEELA
NT seq 1359 nt   +upstreamnt  +downstreamnt
atgcgctacctaccccttaccgataccgaccggcaggacatgctgtccgtcatcggggcg
tcctccattgacgacctgttcgtggacgttcctgccgaggcccgcctttcggacaagatc
gccggcctgcccgaccatgccagcgaactggcggtcgagcgccacatggcggcccttgcg
cggaagaatctgtcggcgggggaagcgcccttcttcctgggtgcgggcgcgtacaggcat
catgtccccgccagcgtcgatcatctgatccagcgcggcgagttcctgacggcctacacc
ccctatcagccggaaatcgcgcagggcaccttgcaggtgctgttcgaattccagacgcag
gtggcgcgcctgctgggctgcgacgtcgccaacgcctccatgtatgacgggtcgaccgcc
tgctgggaagcgatcggcatggcccgccgcatcaccaggcgcggcaaggcgatcctgtcg
tccggcctgcacccccattatgtctcggtcgccaacaccatggcgaagttcaccggcgac
gcgctggtgcatcaggcgccgacgctggacgccgccaccgacaccgacgcgctgatcgcc
gggatcgacaaggatacaagctgcgtcgtcgtccaatatcccgacattctcggccgcatc
gccgacctgacgccgctcgccgatgccgcccacgcggcgggcgcgctgctggtcgcggtc
gtcaccgagccggtcgccctgggtgcgatcagggcgccgggccatatggatgcggacatc
gtcgtcggggaagggcagtccatcggcgtcggcctgcaatttggcgggccttatctgggc
ctgttcgcgtgcaagcagaaatatgtccgccagatgccgggccgcctttgcggcgagacg
gtggacgcggcgggcaagcgcggcttcgtgctgacgctttctacgcgcgagcagcatatc
cgccgtgaaaaggcgacgtcgaacatctgcaccaattccggcctctgcgcgctggcgttc
agcatccatatgacgctgctgggcgaaaggggattgcgggaactggcggcgctcaaccat
gggctggccgttcaggcggccgaccggctggcccaggtgcccggcgtcacgctgctcaac
gacagtttcttcaacgaattcaccctgatcctgtcgaaggacgcccgcgaagtcgtccgc
aacctggcggacaagggcgtgctgggcggcgtctcgctcggtcgcctgttcccggacgcg
ccggcaatcggcaacggactggtcgtcgccgtcaccgaaaccgtgacggtggaggatatc
gaaatcttcgcgaaggcgctggaggaggaactggcatga

KEGG   Sphingobium sp. RSMS: EGM87_10705
Entry
EGM87_10705       CDS       T10811                                 
Symbol
gcvPB
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase subunit GcvPB
  KO
K00283  glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
Organism
sprs  Sphingobium sp. RSMS
Pathway
sprs00260  Glycine, serine and threonine metabolism
sprs00630  Glyoxylate and dicarboxylate metabolism
sprs00670  One carbon pool by folate
sprs00785  Lipoic acid metabolism
sprs01100  Metabolic pathways
sprs01110  Biosynthesis of secondary metabolites
sprs01200  Carbon metabolism
Module
sprs_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sprs00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    EGM87_10705 (gcvPB)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    EGM87_10705 (gcvPB)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    EGM87_10705 (gcvPB)
   00670 One carbon pool by folate
    EGM87_10705 (gcvPB)
Enzymes [BR:sprs01000]
 1. Oxidoreductases
  1.4  Acting on the CH-NH2 group of donors
   1.4.4  With a disulfide as acceptor
    1.4.4.2  glycine dehydrogenase (aminomethyl-transferring)
     EGM87_10705 (gcvPB)
SSDB
Motif
Pfam: GcvP2_C Aminotran_5 GDC-P Beta_elim_lyase
Other DBs
NCBI-ProteinID: UXC89548
LinkDB
Position
1:complement(2229150..2230721)
AA seq 523 aa
MTMLKEGRPTTPQALTKADSAPATATGNRALMLEEALIFEIGSTETTGVDFAEAPEVASR
LGDLARTDSIGLPGLSEQETVRHYTRLSRQNYAIDLGLFPLGSCTMKHNPRLNEKVARMP
GFADLHPLAPQSTVQGALAVIHELAAWLVTLTGMHSVAMSPKAGAHGELCGLLAIRAALE
ARGDARSVILVPESAHGTNPATAAFCGYKVEDIPATPDGRVDLEALKGRLGPDVAAVMIT
NPNTCGLFERDMKTISDAVHAAGAFVYCDGANFNAIVGRVRPGDLGVDAMHINLHKTFST
PHGGGGPGSGPVVLSEALAPFAPLPFVEKQGDKFVLVEEETAEDHHGQTFGRMVAFHGQM
GMFTRALTYILSHGADGLRQVASDAVLNANYILRSLDDVLDAPFGGSGPCMHEALFSDKG
LAEGFTTLDIAKGLIDEGFHPMTMYFPLVVHGAMLVEPTETESKAALDQFILALRSLAER
AKAGDEALKGAPYFAPRRRLDETLAARKPVLTWTEPALAEAAE
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgaccatgctcaaggaaggccggccgaccacgccgcaggctctgaccaaagccgacagc
gcgcccgcgaccgccacgggcaaccgggcgctgatgctggaggaagcgctgatcttcgaa
atcggctcgaccgagacaactggcgtcgactttgccgaagcgccagaggtcgccagccgt
ctcggcgatctggcccgcaccgacagcattggcctgcccggcctgtcggagcaggaaacg
gtgcgccattacacccgcctcagccgccagaactacgccatcgaccttggcctgtttccg
ctcggctcctgcacgatgaagcataatccgcgcctgaacgagaaggtggcgcggatgccc
ggtttcgcggaccttcacccgcttgcaccccaatcgacggtgcagggcgcgctggcggtg
atccatgaactggccgcctggctggtgaccctgaccggcatgcattccgtcgcgatgagc
cccaaggcgggcgcgcatggcgaattatgcggcctgcttgcgatccgcgcggcgctggaa
gcgcggggcgatgcgcgcagcgtcatcctggtgccggaaagcgctcatggcaccaaccct
gcgaccgccgccttctgcggctataaggtcgaggatattccggcgacaccggacggccgg
gtcgatctggaagcgctgaagggccgcctcggccctgacgtcgcggcggtgatgatcacc
aatcccaatacctgcggcctgtttgagcgggacatgaagacgatctccgacgcggtgcat
gccgccggggccttcgtctattgcgacggcgcgaacttcaacgccatcgtcgggcgggtc
cgccccggcgatctgggcgtcgacgcgatgcacatcaacctgcacaagaccttctccacg
ccgcatggcggcggcggtcccggctccggcccggtggtgctgtccgaagcgctcgcccct
ttcgcgccgctgcccttcgtcgaaaagcagggcgacaaattcgtgctggtcgaggaagag
acggcggaagaccatcacggccagacctttggccgcatggtcgccttccatggccagatg
ggcatgttcacccgcgccctgacctacatcctcagccatggcgcggacggcctgcggcag
gtcgccagcgatgcggtgctgaacgccaactatatcctgcgcagcctggacgatgtgctg
gacgcgcccttcggcggcagcggcccctgcatgcatgaggcgctgttcagcgacaagggg
ctggcggaaggcttcaccacgctcgacatcgcgaaggggctgatcgacgagggcttccac
ccgatgaccatgtatttcccgctggtggtgcatggcgcgatgctggtcgaacctacggag
acggagagcaaggccgcgctcgaccagttcatcctggcgctgcgcagcctggccgaacgc
gccaaggcaggtgacgaggcgctgaaaggcgcgccctatttcgccccgcgccgccgcctg
gacgaaacgctggctgcgcgcaagccggtcctcacatggaccgagccggcgctggcggaa
gcggccgaatga

KEGG   Sphingobium sp. RSMS: EGM87_10720
Entry
EGM87_10720       CDS       T10811                                 
Symbol
gcvT
Name
(GenBank) glycine cleavage system aminomethyltransferase GcvT
  KO
K00605  glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
Organism
sprs  Sphingobium sp. RSMS
Pathway
sprs00260  Glycine, serine and threonine metabolism
sprs00630  Glyoxylate and dicarboxylate metabolism
sprs00670  One carbon pool by folate
sprs00785  Lipoic acid metabolism
sprs01100  Metabolic pathways
sprs01110  Biosynthesis of secondary metabolites
sprs01200  Carbon metabolism
Module
sprs_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sprs00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    EGM87_10720 (gcvT)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    EGM87_10720 (gcvT)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    EGM87_10720 (gcvT)
   00670 One carbon pool by folate
    EGM87_10720 (gcvT)
Enzymes [BR:sprs01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.2  Hydroxymethyl-, formyl- and related transferases
    2.1.2.10  aminomethyltransferase
     EGM87_10720 (gcvT)
SSDB
Motif
Pfam: GCV_T GCV_T_C
Other DBs
NCBI-ProteinID: UXC89551
LinkDB
Position
1:complement(2232594..2233745)
AA seq 383 aa
MSGNDDIAHLEEELPLQDLPLDGWHRARGARMVGFAGYHMPIQYEGIMAEHAWTREHAGL
FDVSHMGQIGFSGEGVDDALEILLPSDIKGLKPFRQRYSMLLDEEGGILDDLMVSRLGDG
AFDGADIYMVVNGATKYDDIGWMIEHLPDEVVMNHMDEQALLALQGPEAGEAMATLVPET
ADLIFMQSGLFTWRGVPLWISRSGYTGEDGFEISLPAADVTLLADALCALPQVKPIGLGA
RDSLRLEAGLPLYGHDLTPAVSTIGADLGFAIHKRRREEGGFIGHARVMKELADGPGSKR
VGLRIEGRLPAREGATIHAGGAQVGEVTSGGFAPTVGAPIAMGWVSLPHSAIGTALEIEV
RGKRIAAEVAPMPFVPHRYRRKA
NT seq 1152 nt   +upstreamnt  +downstreamnt
atgtccggcaatgacgacatcgcccatctcgaagaagaattgccgttgcaggacctgccg
ctggatggctggcaccgcgccaggggcgcgcgcatggtcggcttcgcgggctatcacatg
ccgatccaatatgaaggcatcatggccgaacatgcctggacccgcgaacatgccgggctg
ttcgacgtcagccatatgggccagataggcttttccggcgaaggcgtggacgacgcgctg
gaaatcctgttgccgagcgacatcaaggggctgaagccctttcgccagcgctattcgatg
ctgctcgatgaagaaggcggcatattggacgacctgatggtctcccgcctgggggacggc
gccttcgacggcgcggacatctatatggtggtcaacggcgcgaccaaatatgacgacatc
ggctggatgatcgagcatctgcccgatgaagtggtgatgaatcacatggacgagcaggcc
ctgctcgccttgcaggggccggaagcgggggaggcgatggccacgctggtcccggaaacc
gcggatctgatcttcatgcagtccggcctcttcacctggcgcggcgttccgctgtggatc
agccggtcgggctataccggcgaggatggcttcgagatcagcctgcccgccgcggatgtg
acgctgctggccgatgcgctctgcgcgttgccgcaggtgaagccgatcggccttggggca
cgcgattccctgcgcctggaggctgggctgccgctttacggccatgacctgacgcctgcc
gtcagcaccatcggcgccgatctgggcttcgccatccataagcgcaggcgggaagaaggc
ggcttcatcggccatgcgcgggtgatgaaggaattggccgacggaccgggttcgaagcgc
gtgggcctgaggatcgagggccgcctgccggcgcgggagggcgcgacgatccatgccggc
ggcgcgcaggtgggcgaagtcacgtccggcggcttcgcgcctacggtgggcgcgccgatc
gcgatgggctgggtcagcctgccccacagcgcgatcggcacggcgctcgaaatcgaagtg
cgcggcaagcgcatcgcggcggaggttgcgccgatgccgttcgttccgcaccgttatcgc
cgcaaagcctga

KEGG   Sphingobium sp. RSMS: EGM87_01385
Entry
EGM87_01385       CDS       T10811                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
sprs  Sphingobium sp. RSMS
Pathway
sprs00010  Glycolysis / Gluconeogenesis
sprs00020  Citrate cycle (TCA cycle)
sprs00260  Glycine, serine and threonine metabolism
sprs00280  Valine, leucine and isoleucine degradation
sprs00310  Lysine degradation
sprs00380  Tryptophan metabolism
sprs00620  Pyruvate metabolism
sprs00630  Glyoxylate and dicarboxylate metabolism
sprs00640  Propanoate metabolism
sprs00670  One carbon pool by folate
sprs00785  Lipoic acid metabolism
sprs01100  Metabolic pathways
sprs01110  Biosynthesis of secondary metabolites
sprs01120  Microbial metabolism in diverse environments
sprs01200  Carbon metabolism
sprs01210  2-Oxocarboxylic acid metabolism
sprs01240  Biosynthesis of cofactors
Module
sprs_M00009  Citrate cycle (TCA cycle, Krebs cycle)
sprs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sprs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
sprs_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sprs00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    EGM87_01385 (lpdA)
   00020 Citrate cycle (TCA cycle)
    EGM87_01385 (lpdA)
   00620 Pyruvate metabolism
    EGM87_01385 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    EGM87_01385 (lpdA)
   00640 Propanoate metabolism
    EGM87_01385 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    EGM87_01385 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    EGM87_01385 (lpdA)
   00310 Lysine degradation
    EGM87_01385 (lpdA)
   00380 Tryptophan metabolism
    EGM87_01385 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    EGM87_01385 (lpdA)
   00670 One carbon pool by folate
    EGM87_01385 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sprs04147]
    EGM87_01385 (lpdA)
Enzymes [BR:sprs01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     EGM87_01385 (lpdA)
Exosome [BR:sprs04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   EGM87_01385 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox FAD_oxidored GIDA Pyr_redox_3 FAD_binding_2 NAD_binding_8 AlaDh_PNT_C HI0933_like Thi4 FAD_binding_3 Lys_Orn_oxgnase 3HCDH_N DAO
Other DBs
NCBI-ProteinID: UXC91170
LinkDB
Position
1:302136..303536
AA seq 466 aa
MADFDYDVLVIGAGPGGYVAAIRAAQLGLKTACAESRETLGGTCLNVGCIPSKALLHASE
LYEEAANGALAKLGVKIDKMSLDLDTMQGQRKEAVKGLTGGIEYLFKKNKVDWLKGLATF
AGANTVEVAGKTVTAKNIVIATGSSVTPLPGVAVDNAGGRIVDSTGALELDKVPGHLVVV
GGGVIGLELGSVWRRVGAKVTVVEFLDQILPGMDGEVRKEANKIFKKQGFEYKLGTKVTG
AEVGKKGVTLTVEPAAGGEAEKIEADVVLVSIGRRPNTEGLGLDKIGLELNARGQIETDH
DFATKVPGVWAIGDVIPGPMLAHKAEDEGIAVAENIAGLTGIVNHDVIPSVVYTKPEIAG
VGLTEEAAKEKGAIKVGKFPMLANSRAKTNHEPDGFVKIIADAETDKVLGVWIIATVAGT
MIAQAAQAMEFGASSEDIAYTCHAHPTHSEAIKEAAMAVTGKPIHI
NT seq 1401 nt   +upstreamnt  +downstreamnt
atggcagacttcgattatgatgttctggtgattggcgccggtcccggtggttatgtcgcg
gcgatccgcgcggctcagctcggcctcaagaccgcctgcgccgaaagccgcgagacgctg
ggcggcacctgcctcaatgtcggttgcattccgtccaaggcgctgctgcacgcttcggaa
ctgtatgaggaagccgccaatggcgcgctcgccaagctgggcgtgaagatcgacaagatg
agcctcgatctcgacaccatgcagggccagcgcaaggaagcggtgaagggcctgaccggc
ggcatcgaatatctgttcaagaagaacaaggtcgactggttgaagggtctggcgaccttc
gccggcgccaacaccgttgaagtcgcgggcaagacggtgacggcgaagaacatcgtcatc
gccaccggctcgtcggtcacgccgcttccgggcgttgcggtcgacaatgcggggggcagg
atcgtcgattcgaccggcgcgctggagctggacaaggttcccggccatctggtcgtcgtt
ggcggcggggtcatcgggctggaactgggttccgtatggcgtcgcgtcggtgcgaaggtc
acggtggtcgagttcctcgaccagatcctgcccggcatggacggcgaagtccgcaaggaa
gccaacaagatcttcaagaagcagggcttcgaatataagctcggcaccaaggtcacgggc
gcggaagtcggcaagaagggcgtgaccctgaccgtcgagccggccgccggcggcgaggcg
gagaagatcgaggccgatgtggtgctggtgtcgatcggccgtcgtccgaacacggagggg
ctgggtctcgacaagatcggtctggaactcaatgcccgtggccagatcgagaccgatcat
gacttcgcgaccaaggttcccggcgtctgggccattggcgatgtcatccccggcccgatg
ctcgcgcacaaggccgaggatgaaggcattgccgttgccgagaatatcgcgggcctgacc
gggatcgtgaaccatgacgtgatcccgtcggtggtctataccaagccggagatcgctggc
gtgggcctgacggaagaggccgccaaggaaaagggcgcgatcaaggtcggcaaattcccg
atgctggcgaacagccgcgccaagaccaaccatgagcccgatggcttcgtgaagatcatt
gccgatgcggaaaccgacaaggtgctgggcgtctggatcatcgcgacggttgcgggcacg
atgatcgcgcaggcggcgcaggcgatggagttcggcgcttcgagcgaggacattgcctat
acctgccacgcgcatccgacgcatagcgaggcgatcaaggaagcggccatggccgtgacg
ggcaagccgatccacatctga

KEGG   Sphingobium sp. RSMS: EGM87_07495
Entry
EGM87_07495       CDS       T10811                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
sprs  Sphingobium sp. RSMS
Pathway
sprs00010  Glycolysis / Gluconeogenesis
sprs00020  Citrate cycle (TCA cycle)
sprs00260  Glycine, serine and threonine metabolism
sprs00280  Valine, leucine and isoleucine degradation
sprs00310  Lysine degradation
sprs00380  Tryptophan metabolism
sprs00620  Pyruvate metabolism
sprs00630  Glyoxylate and dicarboxylate metabolism
sprs00640  Propanoate metabolism
sprs00670  One carbon pool by folate
sprs00785  Lipoic acid metabolism
sprs01100  Metabolic pathways
sprs01110  Biosynthesis of secondary metabolites
sprs01120  Microbial metabolism in diverse environments
sprs01200  Carbon metabolism
sprs01210  2-Oxocarboxylic acid metabolism
sprs01240  Biosynthesis of cofactors
Module
sprs_M00009  Citrate cycle (TCA cycle, Krebs cycle)
sprs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sprs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
sprs_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sprs00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    EGM87_07495 (lpdA)
   00020 Citrate cycle (TCA cycle)
    EGM87_07495 (lpdA)
   00620 Pyruvate metabolism
    EGM87_07495 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    EGM87_07495 (lpdA)
   00640 Propanoate metabolism
    EGM87_07495 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    EGM87_07495 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    EGM87_07495 (lpdA)
   00310 Lysine degradation
    EGM87_07495 (lpdA)
   00380 Tryptophan metabolism
    EGM87_07495 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    EGM87_07495 (lpdA)
   00670 One carbon pool by folate
    EGM87_07495 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sprs04147]
    EGM87_07495 (lpdA)
Enzymes [BR:sprs01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     EGM87_07495 (lpdA)
Exosome [BR:sprs04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   EGM87_07495 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_binding_2 GIDA HI0933_like NAD_binding_8 FAD_oxidored FAD_binding_3 AlaDh_PNT_C Lys_Orn_oxgnase Thi4 2-Hacid_dh_C 3HCDH_N GMC_oxred_N UDPG_MGDP_dh_N DFP
Other DBs
NCBI-ProteinID: UXC92302
LinkDB
Position
1:complement(1617381..1618778)
AA seq 465 aa
MAENYDLIVLGSGPGGYVAAIRAAQLGLKTAIVERENLGGICLNWGCIPTKALLRSAEIY
HYMQHAGDYGLAADKISADIAAVVKRSRGVAKQLNQGVTHLMKKNKIAVHMGEGKLTGKG
RLSVTRDGKTEELTAKNIIVATGARARDLPGSPADGKRVWTYRHAMTPPEMPGKLLVIGS
GAIGIEFASFYNDMGADVTVVEMMDRIVPVEDADVSAFLEKALKKQGMTILTGAGVSDIQ
VGANGVKAKLKDKAGKESVAEFSHMIVAIGIVPNTENIGLKELGVAMDERGFLKTDAMCR
TNVDGLWAIGDITAPPWLAHKASHEGVIAAEAIAGKHPHAMDPRNIPGCTYCHPQIASVG
LTEAKAKEAGYEVKVGMFPFIGNGKAIALGEAEGFTKTVFDAKTGELLGAHMVGAEVTEM
IQGYTIGKTLETTEAELMHTVFPHPTISESMHESVLAAYGRALHI
NT seq 1398 nt   +upstreamnt  +downstreamnt
atggctgagaattacgacctcatcgttctgggctccggccccggcggctatgtggccgcg
atccgcgccgcccaactgggcctgaagaccgccattgtcgagcgggagaatctgggcggc
atctgcctcaactggggctgcattccgaccaaggcgttgctgcgttccgcggaaatctac
cattatatgcagcatgccggggactatggactggcggccgataagatcagcgccgacatc
gcggcggtggtgaagcgttcgcgcggcgtcgccaagcaactgaaccagggcgtcacgcac
ctgatgaagaagaacaagatcgccgttcatatgggcgagggcaagctgaccgggaagggc
aggctcagcgtcaccagggacggcaagacggaggaactgacggcgaagaacatcatcgtc
gccaccggtgcgcgggcgcgcgacctgccgggcagcccggccgacggcaagcgcgtctgg
acctatcgccacgccatgaccccgccggaaatgccgggcaagctgctggtcatcggatcg
ggcgcgatcggcatcgagttcgccagcttctacaatgacatgggcgccgacgtgaccgtg
gtcgagatgatggaccgcatcgtgccggtcgaggatgcggatgtttccgcctttctcgaa
aaggcgctgaagaagcagggcatgaccatcctgaccggtgccggcgtcagcgacatccag
gtcggcgccaatggcgtcaaggcgaagctgaaggacaaggcgggcaaggagagcgtcgcc
gaattcagccacatgatcgtcgccatcggcatcgtccccaatacggagaatatcggcctc
aaggaactgggcgtcgccatggacgagcgcggtttcctgaagaccgacgcgatgtgccgc
accaatgtcgacggcctctgggcgatcggtgacatcactgccccgccgtggctggcgcac
aaggcgagccatgagggcgtgatcgcggcggaagccattgccggcaagcatccccatgcc
atggacccgcgcaatattccgggctgcacctattgccatccgcagatcgcctccgttggc
ctgactgaagccaaggcgaaggaagccggctatgaggtgaaggtcggcatgttccccttc
atcggcaatggcaaggccatcgcgctgggcgaggcggaaggcttcaccaagacggtgttc
gatgccaagaccggcgagttgcttggcgcgcatatggtcggtgcggaagtgaccgagatg
atccagggctataccatcggcaagacgctggagacgaccgaggcggaactgatgcacacc
gtcttcccgcatccgaccatctcggaatcgatgcatgaaagcgtgctcgccgcttatggg
cgcgcactccatatctga

KEGG   Sphingobium sp. RSMS: EGM87_10715
Entry
EGM87_10715       CDS       T10811                                 
Symbol
gcvH
Name
(GenBank) glycine cleavage system protein GcvH
  KO
K02437  glycine cleavage system H protein
Organism
sprs  Sphingobium sp. RSMS
Pathway
sprs00260  Glycine, serine and threonine metabolism
sprs00630  Glyoxylate and dicarboxylate metabolism
sprs00670  One carbon pool by folate
sprs00785  Lipoic acid metabolism
sprs01100  Metabolic pathways
sprs01110  Biosynthesis of secondary metabolites
sprs01200  Carbon metabolism
Brite
KEGG Orthology (KO) [BR:sprs00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    EGM87_10715 (gcvH)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    EGM87_10715 (gcvH)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    EGM87_10715 (gcvH)
   00670 One carbon pool by folate
    EGM87_10715 (gcvH)
SSDB
Motif
Pfam: GCV_H Biotin_lipoyl
Other DBs
NCBI-ProteinID: UXC89550
LinkDB
Position
1:complement(2232197..2232568)
AA seq 123 aa
MSRYFTDEHEWIDVEGEIATVGITDYAQEQLGDIVFVELPAEGTTFEKGDDAAVVESVKA
ASDVYAPISGEVVETNSALEDEPALVNSDAEEDGWFFKLRVTDASELEGLMNEAAYKKFV
ASL
NT seq 372 nt   +upstreamnt  +downstreamnt
atgagccgttatttcaccgacgaacatgaatggatcgatgtcgagggcgaaatcgccacg
gtcggcatcaccgattatgcgcaggagcagttgggcgacatcgtgttcgtcgaattgcct
gcggagggcacgaccttcgaaaagggcgatgacgcggccgtggtggagtcggtcaaggcc
gcctcggacgtctatgcgccgatttccggcgaggtcgtggaaaccaacagcgcgctggaa
gacgagcctgcgctggtgaacagcgatgccgaggaggatggctggttcttcaagctgcgc
gtcacggatgccagcgaactggaaggcctgatgaacgaagccgcctacaagaagttcgtc
gcgagcctttga

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