Sphingobium sp. RSMS: EGM87_12745
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Entry
EGM87_12745 CDS
T10811
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sprs Sphingobium sp. RSMS
Pathway
sprs03410
Base excision repair
sprs03430
Mismatch repair
sprs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EGM87_12745 (recJ)
03430 Mismatch repair
EGM87_12745 (recJ)
03440 Homologous recombination
EGM87_12745 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sprs03400
]
EGM87_12745 (recJ)
DNA repair and recombination proteins [BR:
sprs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EGM87_12745 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EGM87_12745 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EGM87_12745 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
UXC89918
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Position
1:complement(2632052..2633818)
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AA seq
588 aa
AA seq
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MTIALNITRSILGQPWRWRGGNGDGRDPGYRPDDLVTQLLLARGCPREAVEAHRNPTIRH
FMPDPSLFRDMDAAAERLADAVVRGEDVRIFGDYDVDGATSAALLIRLLRDLGLAARPYI
PDRLMEGYGPSGEALVRLAGEGATLIVTVDCGAQAFEALAMAKAAGVDVVVVDHHKCAAA
LPEALALVNPNRLDEAEEAAAHGHLAAVGVAFLLGAALIRALRRRGWFDRRAEPPLMELL
DIVALGTVADVAQLKGLNRAFVAQGLKIMAKRRNIGLSALIDASRLTRAPLCHDLGFALG
PRINAGGRVGKADLGVRLLITEDPAEAAKIAQELDRLNEERRAIEAAVQAEAEELLAAQG
NRAVALVSGAGWHPGVIGIVAGRIKEKAGRPAIVVALDEEGVGKGSGRSISGVDLGAAIL
AAKDSGLLVAGGGHAMAAGLTVAADKVDALADFLDERLANAVARARDDRALLIDAVLAPA
GVNPDFVAAIDAGGPYGAGWPAPLIASGPMRVVKADVVGNGHLRAIMAGDDGRSIKTIAF
RQAESDLGQAILGAPRDRRLWIAGRAKIDDWGPRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcgcgctcaacatcacccgctctatccttggccaaccctggcggtggcgcggg
ggcaatggcgacgggcgcgatcccggttatcggcccgacgatctggtcacgcaattgctg
ctggcgcgcggttgcccgcgtgaggcggtggaggcgcaccgcaaccccaccatccgccat
ttcatgcccgaccccagcctgttccgagacatggacgccgccgccgaacggctggccgat
gcggtggtgcgcggggaggatgtgcgcatcttcggcgattatgatgtcgacggcgcgacc
agcgcggcgctgctgatacgcctgctgcgcgatctggggctggcggcgcggccctatatt
cccgatcggctgatggagggatacggcccctccggcgaggcgctggtgcggctggcgggc
gagggggcgacgctcatcgtcacggtggattgcggcgcgcaggcgttcgaggcgctcgcc
atggcgaaggcggcaggagtcgatgtcgtggtggtcgaccatcataaatgcgccgccgcc
ctgcccgaagcgctggcgctggtgaaccccaaccgcctggacgaagcggaggaagcggcg
gcgcacggtcatctggcggccgtgggcgtggccttcctgctcggtgcggcattgatccgc
gcgctgcgcagacgcggctggttcgaccggcgtgccgagccgcccttgatggaactgctc
gacatcgtcgcgctgggcacggtggcggatgtggcgcaactgaagggcctcaaccgcgcc
ttcgtcgcgcaggggctgaagatcatggcgaagcggcgcaatatcggcctttccgccctg
atcgacgccagccgcctgacgcgcgcgccgctgtgccacgatctgggcttcgcgcttggc
ccgcgcatcaatgcgggcgggcgcgtgggcaaggcggatctgggggtgcggctgctgatc
accgaagatccggcggaagcggcgaagatcgcgcaggagctggaccggctcaatgaggaa
cgccgcgccatagaggcggcggtgcaggcggaggcggaggaactgctcgcggcgcagggc
aatcgggcggtggcgctggtttcgggcgcgggttggcatcccggcgtgatcggcatcgtc
gccgggcgcatcaaggagaaggcggggcgccccgccatcgtcgtcgccctggatgaggaa
ggcgtcggcaaggggtcgggccgctccatctccggcgtcgatctgggcgcggcgatcctg
gcggcgaaggacagcggcctgctggtcgcgggtggtggtcatgccatggcggcgggcctg
acggtcgcggcggacaaggtggatgcgctggccgacttcctcgacgaacggctcgccaac
gcggtcgccagggcgcgggacgaccgggcgctgctgatcgacgccgtgctggcgcctgcg
ggggtcaatccggatttcgtcgccgccatcgacgccggcggtccctatggggcggggtgg
cctgcgccgctcatcgcctccggcccgatgcgggtggtcaaggccgatgtcgtcggcaac
ggccatttgcgcgcgatcatggcgggcgacgatggccggtcgatcaagaccatcgccttc
cgccaggcggaatccgatctgggccaggccattctcggcgcgccgcgcgaccggcgcctg
tggatagcgggccgcgcgaagatcgacgattggggcccccgtcctgccgccgaactgcat
ctggaggacgccgcctgggccgattga
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