Sphingobium sp. RSMS: EGM87_13145
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Entry
EGM87_13145 CDS
T10811
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sprs Sphingobium sp. RSMS
Pathway
sprs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
EGM87_13145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprs03019
]
EGM87_13145
03009 Ribosome biogenesis [BR:
sprs03009
]
EGM87_13145
04131 Membrane trafficking [BR:
sprs04131
]
EGM87_13145
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sprs04147
]
EGM87_13145
Messenger RNA biogenesis [BR:
sprs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
EGM87_13145
Ribosome biogenesis [BR:
sprs03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
EGM87_13145
Membrane trafficking [BR:
sprs04131
]
SNARE
SNARE associated proteins
Others
EGM87_13145
Autophagy
Aggrephagy
Other aggrephagy associated proteins
EGM87_13145
Exosome [BR:
sprs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
EGM87_13145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
AAA_5
CDC48_2
AAA_33
AAA_2
AAA_14
TIP49
IstB_IS21
NACHT
nSTAND3
NPHP3_N
AAA_28
RNA_helicase
AAA_18
AAA_30
Mg_chelatase
AAA_7
Zeta_toxin
ABC_tran
AAA_11
AAA_17
AAA_24
AAA_19
Sigma54_activat
DUF815
TsaE
ATPase
AAA_3
Parvo_NS1
NB-ARC
AAA_lid_PRS2_C
SLFN-g3_helicase
AAA_25
PhoH
bpMoxR
Sigma54_activ_2
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UXC89991
LinkDB
All DBs
Position
1:complement(2718806..2721100)
Genome browser
AA seq
764 aa
AA seq
DB search
MAEEETAGRRIQVANARPEDAGRGLARLPLAVMAELHLAEGDVVEIAGKRSTPARVVRPY
KEDEGLDVLRLDGLQRANAGVGSGDFVIIRKVDPRPAQRVVFAPAQNNLRLQGNPEALKR
VFFQRPLASGDVVATAGQQQVPPGDMPPQLRQMLAAPAYALQEIRLVVVSTVPKGIVHID
ADTEVELRAEYEEPRESRRADVTYDDVGGMAEAIDQLREMVELPLRYPELFERLGVDPPK
GVLLHGPPGTGKTRLARAVANESEAEFFLINGPEIMGSAYGESEKQLREIFEAAAKSAPS
ILFIDEIDSIAPKRGNVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRR
PGRFDREIIVGVPDERGRREILGIHTRGMPLADGVDLGELARMTYGFVGADLAALTREAA
IETVRRFMPRLNLEEGTIPPDVLEELSVARDDFMAAIKRVQPSAMREVMVQAPNIGWADI
GGLDEAQMRLKEGVELPLKDPDAFRRIGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPQVTERV
VNTILAEMDGLEELQSVVVIGATNRPTLIDPALLRPGRFDELIYVPVPDQAGRRRILSIH
TGKMPLAEDVDLDALAERTERFTGADLEDLVRRAGLVALRQSLSVDKVTQAHFEAALEDT
RASVTPEMEREYEQIQATLKQSVMQIDPIGFVSPGMLRARARTE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagaagaaaccgcaggacgcaggatacaggtggccaacgcgcggccagaggat
gcggggcgcggccttgcccgccttcctttggcggtcatggcggaactccaccttgcggaa
ggcgatgtggtggagatcgcgggcaagcggtcgacccccgcgcgggtggtccggccctat
aaggaggatgaggggctagatgtccttcgcctcgacgggcttcagcgggccaatgccggc
gtcggatcgggcgacttcgtgatcatccggaaggtcgatccccggcctgcccagcgtgtc
gtcttcgcgcctgcacaaaataatctgcggttgcagggcaatccggaggcgctgaagcgc
gttttcttccagcggccgctcgcctctggcgatgtcgtcgcaactgcgggacagcaacag
gtgccgcccggcgacatgccgccccagttgcgccagatgctggccgccccggcctatgcc
ctgcaggaaatccgcctggtcgtggtgtcgaccgtgcccaagggcatcgtccatatcgac
gccgacacggaagtggaactgcgcgccgaatatgaggagccccgcgaatcccgccgcgcc
gatgtcacctatgacgatgtcggcggcatggccgaagccatcgaccagctgcgggaaatg
gtggaattgccgctgcgctatcccgaactgttcgagcggctgggtgtggacccgcccaag
ggcgtgctgctccacggcccgccgggcaccggcaagacccggctggcccgcgccgtcgcc
aatgaatcggaagcggaattcttcctgatcaacgggccggagatcatgggttcggcctat
ggcgagtcggaaaagcagctccgcgagattttcgaggcggccgccaagtcggcgccgtcg
atcctcttcatcgacgagatcgattccatcgcgcccaagcgcggcaatgtgaccggggag
acggaaaagcgcctcgtcgcccagttgctgacgctgatggacgggctggaaccgcgcacc
aatctggtcgtcatcgccgccaccaaccggccggaagcgatagacgaggcgctgcgccgc
cccggccgcttcgaccgggaaatcatcgtcggcgtgcctgacgagcgcggacggcgggag
atattgggcatccacacccgcggcatgccgctggccgacggcgtcgacctgggtgaactg
gcgcgcatgacctatggctttgtcggtgcggatctggcggcgctgacccgcgaggcggcg
atcgagaccgtgcgccgcttcatgccccggctcaatctggaggagggaacgatcccccct
gacgtgctggaggaactgtccgtcgcgcgcgacgacttcatggccgcgatcaagcgcgtc
cagccctccgccatgcgggaggtgatggtacaggcgcccaatatcggctgggccgacatc
ggcggcctggacgaagcgcagatgcgcctcaaggaaggggtggagctgccgctcaaggac
ccggacgcctttcgccgcatcggcatccgcccggccaaggggttcctgctctacggtccg
cccggcaccggcaagacgctgctggcgaaggccgtggcgcgggaagcgcaggccaatttc
atcgccaccaaatcgtccgacctgctcagcaaatggtatggggaaagcgagcagcagatc
gcccgcctcttcgcccgcgcgcggcaggtggcgccgacggtcatcttcatcgatgaactg
gacagcctggttccggcgcgcggcggcggccttggcgaaccgcaggtgacggagcgggtg
gtgaacaccatcctggccgagatggacgggctggaggaattgcagtccgtcgtcgtcatc
ggcgcgaccaatcgcccgacgctgatcgatccggcgctgctgcggccgggccggttcgac
gagctgatctatgtccccgtgcccgatcaggcggggcgcaggcgcatcctgtccattcac
acgggcaagatgccgcttgccgaggacgtcgacctggatgcgctggcggagcgcacggaa
cggttcaccggggccgatctggaggatctggtccgccgcgccggcctggtcgcgctgcgc
cagtcgctgtcggtcgacaaggtcacgcaggcgcatttcgaggccgcgctggaggatacc
cgcgcctccgtcacgcccgaaatggagcgggaatatgagcagatccaggcaacgctgaag
cagagcgtgatgcagatcgatcccatcggcttcgtgtcgcccggcatgttgcgggcgcgc
gccaggactgaatga
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