Sphingobium sp. RSMS: EGM87_17595
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Entry
EGM87_17595 CDS
T10811
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sprs Sphingobium sp. RSMS
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sprs03032
]
EGM87_17595
03400 DNA repair and recombination proteins [BR:
sprs03400
]
EGM87_17595
Enzymes [BR:
sprs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EGM87_17595
DNA replication proteins [BR:
sprs03032
]
Prokaryotic type
DNA Topoisomerases
EGM87_17595
DNA repair and recombination proteins [BR:
sprs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EGM87_17595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UXC90810
LinkDB
All DBs
Position
1:complement(3620300..3621307)
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AA seq
335 aa
AA seq
DB search
MPPDSLVHANDSLPGITRRAMKRGWAYFDASGARITDREEIDRLNAIAMPPAYRDCWFCP
HPHGHIQATGYDDRGRKQYRYHLDFRAAREAEKYAGCPAFGRALPRLRARIEADLSRRGL
RKEKTLAAVVRLLDLAKVRVGNEQYAAANKSFGATTLRRRHVDLRGQALRLRYRAKSGRE
HELTVTDRRLVRFVRAVQDLPGQHLFQYLDEEGVARPITSGDVNAYIAEAMGGDFTAKHF
RTWGASVIAFETLAAGSVSLKQMIEPVAAALGNTPAISRKSYIHPALIELCRNGQDAWRQ
GLRLPRATRYLSRYERGLIAFLEEAGGSTALPLAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccgattccctcgtccatgccaatgacagcctgccgggcatcacgcgccgggcc
atgaaaaggggatgggcctatttcgacgccagcggcgcgcgcatcaccgaccgggaagag
atcgaccggctgaacgccatcgccatgccgcccgcctatcgcgactgctggttctgtccc
catccgcacggccatatccaggcgaccggctatgacgaccggggccgcaagcaatatcgc
tatcatctcgatttccgcgccgcgcgggaggcggagaaatatgccggctgccccgccttc
ggccgcgccctgcccaggctgcgcgcccggatcgaagccgacctgtccaggcgcggcctg
cgcaaggaaaagacgctggccgccgtcgtgcgcctgctcgacctggccaaggtgcgcgtc
ggcaacgagcaatatgccgccgcgaacaagagcttcggcgcgaccacgctgcgccgccgc
catgtcgacctgcgcggacaggcgctgcgcctgcgttaccgggccaagtcggggcgggag
catgagttgaccgtcaccgaccgccgcctcgtccgcttcgttcgcgccgtacaggatttg
ccgggacagcatctgttccaatatctggatgaggaaggcgtcgcccggcccatcacctcg
ggcgacgtcaacgcctatatagccgaagccatgggcggcgatttcaccgccaagcatttc
cgcacctggggcgcttccgtcattgccttcgaaacgctggcggcgggcagcgtgtcgctc
aagcagatgatcgagccggtcgccgccgcgctgggcaacaccccggcgatcagccgcaaa
agctatatccaccccgcgctgatcgagctttgccgcaacggacaggatgcatggcgacag
gggcttcgcctgccgcgcgcaacccgctatctttcccgttacgaacgcggactgatcgct
tttctggaggaggccggcggctcgaccgcccttcccctggcggcctga
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