Sphingobium sp. RSMS: EGM87_24100
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Entry
EGM87_24100 CDS
T10811
Name
(GenBank) strawberry notch family protein
KO
K26273
protein strawberry notch
Organism
sprs Sphingobium sp. RSMS
Brite
KEGG Orthology (KO) [BR:
sprs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sprs03036
]
EGM87_24100
Chromosome and associated proteins [BR:
sprs03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
EGM87_24100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
UXC93789
LinkDB
All DBs
Position
pRSMS1:complement(183948..188147)
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AA seq
1399 aa
AA seq
DB search
MATQPLALTLPLDDPARTAAQGIADRLSEGRSVARNDLLAGMTSAFGGSSADGSWSLRDA
YDVLELAQILHLKNTTLPADANVRLAQLIAMTAALPTHSVRSETQVAFQQFSTPAPIGFL
AARAAAITARDIVLEPSAGTGLLAVHGHFAGARLLLNEIDAWRARLLRHALPEGTLSTHD
GELIDDMLDPQLVPSVVLINPPFSRSQGRGRDRHAALRHLRSALLRLAPGGRCAVILPDR
IETGDADWLHATAGAHLRLHLDLPPHAYAKHGTGQAVQLILLEKGGAGDCVPRQTCTTFG
AALAAIDAMATPCAPTPQPISRPSGLFRSLTRRTRPVSSRVAVTLPTTRAVVYHRLDAPA
PAGEPQGIYLPYRPSRLLIADAREHPSALVESQAMGSIPAPPVAYEPVLPARILDDGLLS
DAQLETLIYAGAAFERDLPGRFVSSEEGLSLSPAEAGNAYRTGFFLGDGTGAGKGRQVAG
VILDQWLRGNRRHLWISKSETLIEDARRDWSALGGLPLDIQHLNQWKLGTPIALGDGILF
LTYATLRSNRGDRGTRLRQLIEWMGEDFSGVIVFDEAHEMAGVAGGEGRFGATKGSEQGI
AGVRLQNLAPRARILYASATGASDVNNLAYATRLGLWGPQTAFADRRAFVESLRRGGIAA
MELIARDLKAQGLYAARALSFAGVEYDILEHRLSEEQIAVYNAYADAWAIIHNNLQAALA
ATRVTDGFSGATYNSGAKAAALSIFESTKQRFFGQILLSMKLPSLIPAIAADLARGDCAV
VQLVSTAEAMLDRALANLSPEERAWLDIELSPREFLVDYLTAAFPVRQMRIYTDDSGTVR
SEPMIDEAGQPVLCREAIAMRDQLLEQLCALPVIGSALDHIIGHFGTEAVAEVTGRSRRI
IVDADGRQRIERRSARTNLAETDIFMRGEKRILIFSDAGGTGRSYHASLDTPNQSRRIHY
LLEPGWRADAAIQGLGRTHRTHQACPPLFRPVSTDCRGERRFISTIARRLDSLGALTRGQ
RQTGGQGLFDPRDNLESDFARESLDQWFRLLFQGKLQSVRFDQFQSLTGLNLAGEGGGLT
ETLPTIQRWLNRILALRIDLQNAIFDEYLGLIEARVEKAREAGTLDLGVETIAADRISIL
DRTVIRRDPVSGAETEILRIETEERYRPLTLERAHWLLADPEARGLINPRSGKAAICRPT
FSLTDEEGRTVRRYELVRPTRTERHRQDLFAETHWTDVDRASFDEAWQAECDAMAAQTRT
QIIYLVTGLLLPVWGKLPDDHVQVWRLTSDDGQSLLGRLIPAPLVERIASAFGIAAHVAI
DLGARVEHVRTSGEIMPIGSLRLKRALVAGDQRLELLDWKSDALPRLKAAGCFTEIIQHR
TRLFVPPSRAVEILGEIAG
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggccacacaacccctcgcgctcacgctgccgctcgatgatcccgcccggaccgctgct
caaggcatagccgaccggctgtccgaaggccgttcggttgcacgtaacgacctccttgcc
gggatgacctccgccttcggtggctcgagcgcggatggctcatggtcattgcgcgacgcc
tatgatgtgctcgaactcgcgcagatcctccatctgaagaacacaacactcccggcagat
gcgaatgtgcggctcgcccagctgatcgccatgacggcggcgcttccgacgcacagcgtg
cgtagcgaaacgcaggtcgcgttccagcaattctcgacaccggcaccgatcggcttcctt
gccgccagggcagccgcgatcacggcacgcgatatcgtgctcgagccctcggccgggacc
gggctcttggccgtacacggtcattttgccggcgctcgccttctcctcaatgagatcgat
gcctggcgcgcgcgtttgctgcgtcatgcccttcccgagggcacattgagcacgcatgac
ggcgaattgatcgacgacatgctcgatccgcaactggtgccgagcgtcgtgctcatcaac
ccgcccttctcgcggagccagggacgggggcgcgaccgccacgctgcgcttcgccacctg
cgctccgcgctcttgcgcctcgcaccaggcgggcgctgcgccgtcattcttcccgatcgc
atcgagacaggggacgcggattggctgcacgccaccgcgggcgcgcatctccggctgcat
ctcgacctgccgccccatgcttatgccaagcacggcaccgggcaagcggttcagctcatt
ctcctcgaaaagggcggggcaggggattgcgtcccacgccagacctgtacgacgttcggc
gctgcgctcgcggccatcgatgcgatggcgaccccgtgcgcccccacgccgcaaccgatc
tcccgccccagcggattgttccggagcctcacgcggcggacccgccccgtaagctcgcgt
gtggcggtgaccctgcccacgacccgcgcggtcgtctatcaccgtctcgacgcgccggcg
cccgcgggcgaaccgcaagggatttacctgccctatcggccgagccgtctgctaattgcc
gatgcccgtgagcacccaagcgcgctggtcgaatcgcaggcaatgggatcgattcccgca
cccccggtcgcttatgaacccgtgctgccggccaggatcttggacgacggcctgctctcg
gacgcgcagctcgaaacgctgatctacgctggcgcggcgttcgagcgcgaccttccgggc
cggttcgtatctagcgaggagggtctttcgctgtcgccggcagaggccggtaacgcctat
cggaccggctttttccttggcgatggcacgggcgccggcaaggggcggcaggtggcgggc
gtcatcctcgaccagtggttgcgcggcaaccgccgccacctctggatatccaagagcgag
acgctgatcgaagacgctcgccgcgactggtcggcgcttggcggcttgccgctcgacatc
cagcatctcaaccagtggaagctcggcaccccgatcgcgctgggcgatgggatcctcttc
ctgacctatgccaccctgcgctccaaccgcggtgacaggggcacgcggctgcgccagctg
atcgaatggatgggtgaggatttcagcggcgtcatcgtcttcgacgaggcgcatgagatg
gccggggtggccggtggcgagggccggttcggcgccacgaaagggtcggaacagggcatc
gccggcgtccgcctgcaaaatctcgctccgcgcgcccggattctctacgcctcggcgacg
ggcgcctcggacgtcaacaacctcgcttatgcgacacgcctcggattgtggggaccgcag
acggccttcgccgaccggcgggccttcgtggaatcgcttcgccgcggcggcatcgcagcg
atggagttgatcgcccgcgacctcaaggcgcagggcctctatgccgcgcgggcgctcagc
ttcgccggcgtcgaatatgacatcctcgagcatcggctcagcgaagaacagatcgccgtc
tacaatgcctatgccgatgcctgggcgatcattcacaacaatctgcaggccgcgctcgcc
gccacgcgcgtcaccgacggcttcagcggtgccacctataatagcggcgcgaaggccgcg
gcattgtcgatcttcgaatcgaccaagcaacgcttcttcggccagatcctgctgtcgatg
aagctgccgtcgctgatcccggcgatcgccgccgatctcgcgcgcggcgactgcgccgtc
gtccagctcgtgtcgacggcggaagccatgctcgaccgtgcccttgccaacctgtccccc
gaggagcgcgcctggctcgacatcgagctgtctccgcgcgaattcctggtcgactatctg
acagcggcctttccggtgcgccagatgcgcatctataccgacgatagcggcacggtgcgc
tcggaaccgatgattgacgaggcgggacagcctgtgctgtgccgggaagcgatcgccatg
cgcgaccagctcctcgagcagctttgtgcgctaccggtgatcggctcggcgctcgatcac
atcatcgggcatttcgggacggaggcagtggccgaggttacgggtcgcagccggcggatc
atcgtcgatgccgacggccgtcagcggatcgaacggcgcagcgcgcgcacgaacctcgcg
gagaccgacatcttcatgcgcggcgaaaagcgcattctgatcttttccgacgccggcggg
acggggcggagctaccacgccagcctcgacacgcccaatcagagccgccgcatccactat
ctgctcgagcccggttggcgcgcggacgcggcgatccaggggctaggccgcacgcatcga
acccaccaagcctgcccgcccctgtttcggcccgtttccaccgattgccgcggcgaacgg
cggttcatctcgaccatcgcccggcgcctcgacagcttgggcgccctgacccgcggccaa
cgccagaccggcgggcagggacttttcgacccccgcgacaatctggagtccgacttcgcg
cgggaatcgctcgaccagtggtttcgcctactgttccagggaaagctccaatcggtgcgc
tttgatcaattccagtcgctcaccggtttgaacctggccggggagggtggggggctcact
gagaccttgcccacgatccagcggtggttgaaccgcatcctggcactgcgcatcgacctg
cagaacgcgatcttcgacgaatatctgggcttgatcgaagcacgggtggaaaaggcccgc
gaggctggcaccctcgatcttggcgtcgaaacgatcgcggccgaccgaatttcgatcctc
gaccgcacggtgatccggcgcgatcccgtgagcggcgccgaaaccgagatcctgcgtatc
gaaaccgaggaacgatatcggccgctgaccctggaacgagcgcattggcttctggccgac
ccggaagcgcgcgggttgatcaacccgcgttccggcaaggccgccatttgccggccgacc
ttctcgctgacggacgaagaggggcggaccgtgcgccgctacgagctggtgcgtccaacg
cgcaccgaacggcaccggcaggacctcttcgccgaaacccattggaccgacgtggaccgc
gcgagcttcgacgaagcctggcaggccgaatgcgacgcgatggccgcgcagacgcgtacg
cagatcatctatctggtcacgggcctgctgctcccggtctggggaaagctgcccgacgat
catgtccaggtctggcggttgacgagcgatgacggccagtcgcttctcgggcgtcttatt
ccggcgccgctggtggagcggatcgccagcgcattcggcatcgccgcccatgtcgcgatc
gatctaggcgcgcgggtcgagcacgttcgcacctcgggcgagatcatgccgatcgggtcg
ctccggctgaagcgggccttggtcgccggcgaccaacgcctcgaattgctcgactggaag
tccgacgcccttcctcgtctcaaggcggcgggctgcttcaccgagatcatccaacaccgc
acgcggctcttcgtcccaccgagccgcgccgtcgagatccttggcgagatagcaggctga
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