Sphingobacterium sp. R2: VXM68_00125
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Entry
VXM68_00125 CDS
T10631
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz03420
Nucleotide excision repair
sprz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VXM68_00125
03430 Mismatch repair
VXM68_00125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sprz03400
]
VXM68_00125
Enzymes [BR:
sprz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VXM68_00125
DNA repair and recombination proteins [BR:
sprz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VXM68_00125
MMR (mismatch excision repair)
Other MMR factors
VXM68_00125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_12
ResIII
AAA_11
YecM
AAA_22
DEAD
Motif
Other DBs
NCBI-ProteinID:
XCY05381
LinkDB
All DBs
Position
complement(26481..28760)
Genome browser
AA seq
759 aa
AA seq
DB search
MDYLAGLNPSQRGAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTN
KAAKEMRARIVSVVGSEAKNIWMGTFHSVFAKILRVEAELIGYPRNFTIYDTDDTKSLLR
AILKEMNLDDKLYNVNHVYGRISQAKNNLISPQEYNKNEAILAEDISNGRGQLGQIYMTY
AQRCYRAGAMDFDDLLFKTNVLLNKHPEVLHKYQHQFRYLMVDEYQDTNFSQYLIVKRLA
AVNENICVVGDDAQSIYAFRGANIQNILNFQKDYPDVKIFKLEQNYRSTKMIVNAANSVI
ANNQNQLEKNVFSDNEEGEKIRVSRAFSDNEEGKIVADQIIEEKSLKGLNFKDFAILYRT
NAQSRAMEEALRKINIPYKIYGGTSFYQRKEIKDLIAYFRLTFNPNDEEALKRVINYPRR
GIGDTTIEKIMIAADQNQYRIWDVVANAAQFLDGRSATSVGGFAQMIQSFQALAKNNNAF
DTAMHIAQHCGILKELYEDKSVEGLARYENIQELLNGIKEFSEREDIEERGLDVYMQDIA
LLTNDDNDKDPNADTVSLMTIHSSKGLEFPIVFIVGLEENLFPSQLSLNSRSELEEERRL
FYVAVTRAEKKLLLSYATSRYRWGTLNNCEPSRFLDELNPACLALDFKPRQTSASAGSFQ
GERIAWQQKDSDDTFSKPKPKPMVKTTSILPKAHKPTAGFAPSDTSNLQVGMEVEHERFG
FGKVVNLEGNKGDIKATIFFKELGQKQLLLKFAKLRIIQ
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
ttggattatttagcgggtttaaacccttcacaacgaggagccgtagagcaaacagaaggt
cctgtgatgattgttgcaggggctggttcaggaaaaacacgggtgattacctatcgtgta
gcacacttgattcgaaaaggtgttgatccattcaatatcttggtattgacatttaccaac
aaggcagccaaagagatgcgtgcccgtatcgtttctgtcgtagggagcgaagcgaaaaat
atttggatgggaacattccactccgtatttgcaaaaatactccgggtagaagctgaattg
atcgggtatcccagaaactttaccatttacgataccgacgataccaaaagcttgttgcgt
gccatcttaaaagaaatgaatcttgacgataaactgtataacgtcaatcatgtgtacgga
cggatctcgcaagcaaaaaacaacctgatatcaccgcaggaatataataagaatgaagcc
atcttggccgaagatatttccaacggtcgtgggcaattgggacaaatttatatgacctat
gcgcaacgctgctacagggcaggagccatggattttgatgatctgttgtttaaaacaaat
gtattattgaataaacatccagaggtactgcataaatatcagcaccagtttcgttatctg
atggtcgatgagtatcaggatacgaacttttcacaataccttattgtcaagcgactggca
gcagtcaacgaaaatatctgtgtcgtaggggatgacgcacagtctatctatgcatttcgc
ggggcaaatattcagaatatcctaaatttccaaaaagattatccggatgtgaagatcttt
aaactggagcagaattatcgatctaccaagatgatcgtgaatgcagctaattcggtgatc
gccaacaatcagaatcaattggagaaaaatgttttttcagataatgaagagggcgaaaaa
atcagggtttcacgtgcgttctctgacaatgaggaaggtaagatcgtcgccgaccagatc
attgaagagaaatcgttaaaagggcttaattttaaagattttgctattctgtatcgtacc
aacgcccaatccagggcaatggaggaggccttacgcaaaattaatattccctataaaata
tatggtggtacttctttctatcaacggaaagaaattaaagatctaatcgcgtattttagg
cttaccttcaatccaaacgatgaggaagcgttaaagcgcgttatcaattacccgcgcaga
gggataggggatacaacaatcgagaagattatgatcgccgcagatcagaatcaataccgc
atttgggatgttgttgccaatgcagctcagtttcttgatggacgtagtgcaacctctgtt
ggtggttttgcacagatgatacagagttttcaagccctggccaaaaataataacgccttt
gatacggccatgcacattgctcagcactgtggtattctaaaagaattgtatgaagataag
tccgtagaaggattggcacgctacgaaaatatccaggaacttcttaatggtattaaggaa
ttttcggagcgagaggacattgaagagcgtggactggacgtatacatgcaagatatcgct
ctgttgacaaacgacgataatgataaagatccaaacgctgataccgtatccttaatgacc
atccactcttcgaaaggactggagtttccgattgtttttatcgttggtttggaagaaaac
ttatttccgtcgcagttatctttaaattccaggtcggaattggaggaagaacgaagactt
ttttatgtcgctgtgactagagctgaaaaaaaattactactttcgtatgctacttcgcga
tatcgttggggaacgctcaataattgcgaacccagtcgcttcttggatgaattaaatccg
gcatgtctagcattggattttaaaccacgacaaacttctgcctcagccggaagttttcaa
ggcgaacgaattgcatggcaacaaaaggacagtgatgacacattttctaaacctaagcct
aagccgatggtgaaaacgacgtcaatactgccaaaagcccacaaacctactgcgggtttt
gctccttcagatacatcaaaccttcaagtcggcatggaagttgaacacgaacgcttcgga
tttgggaaagttgttaatctcgaaggaaataaaggagatattaaagcaactattttcttt
aaagagttgggacagaaacaattgttgcttaaatttgcaaaacttagaataattcaataa
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