Sphingobacterium sp. R2: VXM68_03230
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Entry
VXM68_03230 CDS
T10631
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz03420
Nucleotide excision repair
Brite
DNA repair and recombination proteins [BR:
sprz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VXM68_03230 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VXM68_03230 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_16
DnaJ_CXXCXGXG
AAA_29
RsgA_GTPase
nSTAND3
Viral_helicase1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
XCY05974
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Position
784740..787580
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AA seq
946 aa
AA seq
DB search
MAIKRSPDLGEQSEVQVFGARAHNLKNIDVSFPRNELVVITGLSGSGKSSLAFDTIYAEG
QRRYMETFSAYSRQFLGGMERPDVDKISGLSPVISIEQKTTSKNPRSTVGTITEVYDFMR
LLFARAGEAYSYVTGKKMERMSDDQVIERILTEFEGQALNILAPVVKGRKGHYRELFEQI
RKQGYVKVRVDGEILDLVPKMQVDRYKIHDIEIVVDRLKVEREDKKRLQTSVMQAMKTAK
GIIKVSNKDNQEQFYSRYLMDAESGISYDEPQPNTFSFNSPYGACPTCDGLGYIFEIDKQ
AVIPDKKLSIQKGGLAPLGPTRENWTSEVLKAVAKKLDFTISTPLEKLNEAQIDQLLFGN
KEEPIVVTVSYGSYGTREYRVEFEGIFKMLEEFSGKSSDEAPSLDDFRTKVTCPTCAGAR
LKKESLHFKIADKNIHELATMDITSIKEWFDQVESKLDERQLIIATEILKEIRARLGFLL
DVGLNYLTLDRTAKTLSGGEAQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNERLINAL
KNLRDIGNSVLVVEHDKDMILHADHVIDMGPAAGVHGGTVVAEGTPKEILKSDSLTAAYL
NGTKAVKIPEKRRTGNGKTLSLRGATGHNLKNLSVSFPLGKLIVVSGVSGSGKSSLITGT
LYPILNKHFFRAKATPLPFKKIEGLEHIDKVIEIDQSPIGRTPRSNPSTYTGVFSDIRTL
FVQLPEAKIRGYKPGRFSFNVKGGRCETCQGAGLKVIEMNFLPDVQVPCETCHGKRYNRE
TLEVRYKGKSISDVLDMSINDAVDFFENVPSIYRKIKTLQDVGLGYITLGQSSTTLSGGE
AQRVKLATELSKKDTGNTFYILDEPTTGLHFEDVNVLMGVINRLVDRGNTVLIIEHNLDV
VKSADWVIDIGPEGGKEGGQVLFEGTPENLIKNNKSETARFLKLEM
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggcaataaaaagaagtccagatttgggcgaacaaagtgaagttcaggtatttggagcg
cgtgcgcacaatttaaaaaatatagatgtttcttttccaagaaatgaattggttgtaatt
acagggctaagtggaagtggaaagtcatcgttggcttttgacaccatttatgccgagggg
caacgccgctatatggagacattcagtgcgtatagccgccagtttttgggtggtatggaa
cgtccggatgtggataagatatcgggcttaagtccggtaatctccattgaacagaaaacc
accagcaagaaccccaggtctactgttggaacgatcactgaggtgtatgattttatgcgc
ttactttttgcccgtgctggagaagcctactcttatgtgaccggaaaaaagatggagcgc
atgtcggacgatcaggtcattgaacgtattctgacagaatttgaaggacaggctttaaat
atcctggcacctgtggtcaaaggacgtaaggggcattatcgggaattgttcgaacaaatc
cgcaagcaaggttatgtgaaggtgcgtgtggatggggaaatattggatcttgttccaaaa
atgcaggttgaccggtataaaatacacgatattgaaatcgtagtagatcgtctgaaagta
gagcgtgaagataaaaagcgcttacagacttcggtcatgcaggcgatgaaaacagcaaaa
ggaatcatcaaagtatctaacaaggacaatcaggagcaattttatagccggtacctcatg
gatgcggaatcgggtatttcgtatgatgagccgcaaccaaatacgttttcattcaattcg
ccttatggtgcttgtcccacgtgtgatggtttaggctatatttttgaaattgataagcaa
gcggttattccggacaaaaagctaagcattcaaaaaggcggtttagcgcctctggggccc
acgcgtgaaaactggacttcggaagtcttgaaagctgtcgctaaaaaattggattttacc
atttccacgccgcttgaaaagctcaatgaagcacagattgatcagcttttgtttggaaat
aaagaagaacctatcgttgtcacggtttcttatggcagttatggcacgcgtgaatatcgc
gttgaatttgaaggcatctttaagatgctggaggaattttcgggcaaatcgtccgatgaa
gccccttcgttagatgatttcagaacaaaagttacctgtccgacctgtgcgggcgcacga
ttgaaaaaagaatctttacatttcaaaattgccgataagaatattcatgaacttgctacg
atggatattacttccatcaaagaatggtttgaccaggtagaaagtaaacttgacgaacgc
cagcttattattgcaacagagatcttaaaggaaatccgtgcgcgtttgggtttcttgctg
gatgtaggcttaaattacctgaccctggaccgtacagcgaagacgctttcaggtggtgag
gcacaacgcattcgtttggccacacagattggttcgcaattagtcaatgtactttacatt
cttgatgagccgagtatcggactgcatcagcgggacaatgagcgacttatcaatgcactt
aaaaacctacgcgatattggtaattcggtgcttgtggtagaacatgataaagacatgatc
ctacatgccgaccatgttatcgacatgggacctgctgcgggagttcatggtggtacggtg
gttgccgaaggcacacctaaggaaatcttaaaatcagactccctaacggcagcttatctc
aacggaacaaaagcggtaaaaatccctgaaaaacggcgtacgggcaatggaaaaacattg
tcgttacgaggcgcaacagggcataacttgaagaatctttcggtctcttttcctttagga
aagcttattgtggtgtccggtgtttcgggttcgggcaaatccagcttgattacaggcacg
ttgtacccgattttgaataaacattttttcagggcaaaagcaactccacttcccttcaaa
aaaattgaagggttagaacatattgacaaagttatcgagatcgatcaaagtcctatcggt
cgtacaccgcgatctaacccgtcaacgtacacaggtgtattctcggatatcagaaccttg
tttgtccagttgcctgaagcaaaaatcaggggctataagcccgggagattctccttcaat
gtgaaaggtggtcgttgtgaaacctgtcagggagccggactaaaggtcatcgagatgaat
ttccttcctgatgtacaggttccttgtgaaacctgtcacggaaaacgctataaccgagaa
actttggaggtacgctataaaggaaaatccatttccgatgttctcgatatgagcatcaac
gatgcggtagatttcttcgaaaatgtaccgagtatctaccgaaagattaaaacactgcag
gatgtcggtttgggttacatcaccttaggtcagtcgtcgacaaccttatcgggaggtgag
gctcagcgggtaaaattggctactgaactttctaaaaaagatactggaaatacattttat
atccttgacgaaccgactaccggccttcactttgaagatgtgaatgtactgatgggtgtt
atcaatcgtttagtggaccgtggaaatacggtattgatcatcgagcacaatcttgatgtg
gttaaatcggcagactgggtcattgatattggtcctgagggtggtaaagaagggggccag
gtcttatttgagggaacgcctgaaaacttaattaaaaataataaaagcgaaacggcacgt
ttcttaaagctggagatgtaa
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