Sphingobacterium sp. R2: VXM68_03985
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Entry
VXM68_03985 CDS
T10631
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VXM68_03985 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sprz03400
]
VXM68_03985 (mfd)
Enzymes [BR:
sprz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VXM68_03985 (mfd)
DNA repair and recombination proteins [BR:
sprz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VXM68_03985 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
XCY06118
LinkDB
All DBs
Position
977729..981064
Genome browser
AA seq
1111 aa
AA seq
DB search
MGIQEILEKYSQSESVQSLTKAMQSKNPKIQLKGLIGSSDAFIAVSSYNLQERPMVFILP
THEDASYFLSDLESLLDKQVLFFPSSYRKAFDFTQTDSANVLQRAETLSSLNHTSELPKM
VVTYPEAIAEKVINRSDLDKNTLEITENTALSIDFINEFLIEYDFDRVDFVYEPGQFAIR
GGIVDIFSFSNDLPYRIEFFGDDIESIRTFDIESQLSVKKIHKVTIVPNVQAKFLTSQHI
SLLEYIDQGATIWIKDAQFTLDIVKDGLKKAEKLWVGLTDKQKKDNPEWHNPAHEFTDEK
NLNALFFEFPIVEFGKQFFYKAENTFKFDIHPQPSFNKDFNLLIHNFKENEDQRIQNLIF
SDSTKQVERIYTILEDLDKSATFIPIHKALREGFRDDSLKLACYTDHQIFDRYYKYKRKK
AYERSQAITLKDLRDLKPGDFITHIDHGVGRYGGLEKVDVNGKSQEMIRLIYADNDLLYV
NINSLNRISKYSGKEGTVPKMNKLGTDAWDKLKKTTKKKVKDIARDLIMLYAKRKAQHGN
AFSPDSYLQNELEASFIYEDTPDQEKATADVKKDMESPHPMDRLICGDVGFGKTEVAIRA
AFKAVADSKQVAVLVPTTILALQHFRTFSERLKGLPCNIDYINRFKTTKQIKDTLARLAE
GKIDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVAVKEKLKVMRANVDSLTLTATPIPR
TLHFSLMGARDLSIISTPPPNRQPVQTELHVFNETLIGEAVSYELDRGGQVFFIHNRVAD
LPQLGNLIRKLVPGARVGVAHGQLEGDELEDVMLKFINHDFDVLIATTIIEAGLDIPNAN
TIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEAYKRLSAIEEFSELGS
GFNVAMRDLDIRGSGNLLGGEQSGFIAEIGFEMYHKILDEAIQELKEDEFSEVFADEKER
KYVSFTQIDTDLEVLIPDEYVTSITERYNLYTELSKLENEQQLTAFEQELEDRFGPIPRE
VFELFNTLRLQWFGKTIGFEKIAYKKQTLKAYFVSNPKSSYFESDQFGRVLSFVQNHPEI
SNLKEVKGQLRLALNNVNTIGYALNLLREML
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
gtgggaattcaagaaatattagaaaaatacagtcaaagcgaatccgtccagtcgctaacc
aaggctatgcaatccaaaaatccgaagattcagcttaaaggacttattggctcatctgat
gcatttatagcggtatcttcctacaacttacaggaacgtccaatggtgtttatcttaccg
acccatgaagacgcatcttattttttaagcgatctggaaagcctgctggataagcaggtc
cttttttttccttcgtcttatcgaaaagcatttgattttactcagaccgactctgccaac
gtattgcagcgtgcagagactttaagttcgcttaatcatacctcagaattacctaaaatg
gttgttacgtaccctgaggccattgcggagaaagtaatcaaccgaagtgatttggataag
aatacgttggaaataacagagaatactgctttaagtattgatttcatcaatgaattcttg
attgaatatgattttgatcgcgtagactttgtgtatgagcctggacagtttgcgatacga
ggaggcatcgtagacattttttctttttcgaacgatcttccttaccgtattgaattcttt
ggcgacgatattgaaagcatacggacatttgacattgagtcgcagctttccgtcaaaaag
atccacaaagtaaccattgttcctaacgttcaggctaaattcttgacatcacagcacatt
tcgctgctagaatatattgatcagggcgccacgatctggataaaagacgctcaattcact
ttagatattgtaaaagatgggttaaagaaagcggaaaaattatgggtggggctaacagat
aagcagaaaaaggataatcccgaatggcataacccagcccatgagtttacagatgagaag
aatctcaatgccttattctttgaattcccgatcgtcgaattcggcaaacaattcttttat
aaagcagagaatacctttaagttcgatatccatccgcaaccctctttcaataaagatttt
aatcttttaatccataatttcaaggagaatgaagaccaacgcatccaaaaccttatcttt
tcagattcaacgaaacaggttgagcgtatttataccattctagaagatcttgacaaatcg
gcaaccttcatcccgattcataaagccttacgggagggctttagagacgacagtttaaaa
ctggcatgctatacggatcaccaaatatttgacaggtattataaatacaaacgtaagaag
gcttacgagcgttcgcaggcaattacgctgaaggatttacgggatctcaaaccaggtgat
tttattacccatattgaccacggtgtcggccgatatggaggtttggaaaaggtagatgtt
aacggtaaatctcaggaaatgatccgtctgatctatgcagataatgatcttttgtatgtg
aacatcaactccttaaaccgaatatcaaaatattctggaaaagaaggtacggttcccaaa
atgaataaattgggcacggatgcatgggacaaactcaagaagacaaccaagaaaaaggta
aaagatattgcgcgtgacttaatcatgctctatgccaaacgcaaagcacagcacggaaat
gctttttcacccgatagctacttacagaatgaattggaagcctcctttatttacgaggat
acgcccgatcaggagaaagctactgccgatgtaaaaaaggatatggaatcgccacatcca
atggaccgattgatctgtggggacgtcgggtttggaaaaacggaagttgccatccgtgcg
gctttcaaagctgtagcagacagtaagcaggttgccgtactcgtaccgacgacaatcctt
gcactgcagcatttccgtacattttcggagcgactgaaaggtcttccatgcaatatagac
tacatcaatcgttttaaaacgaccaaacagattaaagataccttagcaaggcttgccgaa
ggaaaaatagacattattataggcacacatcgtcttgtgagcaaagatgttaagtttaaa
gaccttggcctgatgatcattgatgaagagcagaaatttggcgttgccgtaaaggaaaaa
ttgaaagttatgcgtgcgaatgtagattcgctgacactgacagcaacacctattccaaga
acattgcacttttcattgatgggagcccgcgatctgagtatcatctctactccgccgccc
aaccggcagcctgtacagaccgaactccacgttttcaatgaaacactgattggagaggcc
gtcagttacgaacttgatcgtggtggacaggtattttttattcataatcgtgtcgcagat
cttccgcagctgggcaatttgattcgcaagctggttccgggagcacgggtaggtgttgca
catggccaacttgaaggcgatgagcttgaggatgtgatgctcaagtttatcaaccatgat
ttcgatgtcttaattgcaactacgattattgaagcgggtcttgatattccaaatgccaat
acgatcattatcaatcacgcgcatatgtttggcctgagcgatctacaccaaatgcgcggt
cgggttggtcgttccaataaaaaggccttctgttatttactaagtccgccattgtcgact
ttaacgtcggaagcctataaacgactttcggcaatagaagagttttcggaactgggctct
ggatttaatgttgccatgcgcgatctggatatacgtggttcaggaaacctcctaggcggt
gaacaatcgggttttattgccgaaattggttttgaaatgtatcataaaatcttagacgag
gcaattcaagaacttaaagaagacgaattttcggaagtattcgccgatgaaaaagaacga
aaatatgtgtcctttacacagattgataccgacctcgaggtattaattcccgacgaatat
gtgacaagtattacggagcgatataatctgtataccgaactgtccaaactggaaaacgag
cagcaattgacagcctttgagcaggagcttgaagatcgctttggtcctattccacgtgaa
gtatttgaattattcaatacactccgtttgcagtggtttggtaaaacgatcggcttcgaa
aaaatagcttacaaaaaacagacgctgaaagcttactttgtcagtaatcctaaatcaagc
tactttgagtcagaccaatttggccgcgtattgtcttttgtacaaaaccatccagagatc
agcaacttgaaagaagttaaaggccagctccgtttggcgttgaacaatgtgaataccatt
ggatatgcactgaacctcttgagagaaatgttataa
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