Sphingobacterium sp. R2: VXM68_07250
Help
Entry
VXM68_07250 CDS
T10631
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sprz Sphingobacterium sp. R2
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sprz03009
]
VXM68_07250 (rlmD)
Enzymes [BR:
sprz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VXM68_07250 (rlmD)
Ribosome biogenesis [BR:
sprz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VXM68_07250 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
MTS
PrmA
N6_N4_Mtase
Methyltransf_11
Cons_hypoth95
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
XCY06742
LinkDB
All DBs
Position
1762949..1764361
Genome browser
AA seq
470 aa
AA seq
DB search
MSRRIPQDKKFLKDIAIIDIAEEGRGVGKTEDLVLFVEKAVPGDVVDVELMRKKKNFAEA
RVTALKEASSYRVNPFCEHFGVCGGCKWQHMTYDAQLKFKQQSVDNALSRIGKVDTSAME
PILGSVQTEYYRNKLEYTFSNKKWLTSVDEDASVLEMNALGFHVPGRFDKILDIDHCYLQ
EDPSNQVRNSIRDFALGQGITFYDLREHTGVLRNLIIRISSTGEMMVIVVFAYPEEGQVE
LLMNYVKEKFPQITSLLYIVNQKRNDTIFDQDIHIYAGRDFIYEEMEGLRYKVGPKSFYQ
TNSAQAYELYKITRDFADLNGDELVYDLYTGAGTIANFVAKQAREVVGVEYVPTAIEDAQ
VNSSINNITNTKFYAGDMKDVLTPSFIAEHGKPDVVITDPPRAGMHADVVARLLEMESPR
IVYVSCNAATQARDLLLLAEKYEVKRIKPVDMFPHTQHVENVVLLELKKL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaagaattccgcaagataaaaagttcttgaaagatattgccatcattgatatt
gccgaagagggtagaggtgttggaaaaaccgaagatttggttttgtttgttgaaaaagct
gttccgggagatgttgttgacgtggagcttatgcgcaagaaaaagaattttgcagaagct
cgggtaactgctttaaaagaagcctcatcttatcgtgtaaatcctttttgtgagcacttt
ggagtttgtggcggatgtaagtggcagcatatgacctatgatgctcaattgaaatttaag
caacagtctgttgataatgccttatcgcgtattgggaaggttgatacatctgctatggag
cctatattaggctcggtgcaaacggaatattataggaataaattggagtacactttttca
aataaaaagtggttgacttctgtagatgaagatgcgtctgtattggaaatgaatgctttg
ggatttcacgtgccgggacgttttgataaaatcttagatattgatcattgttatttgcaa
gaagacccttcaaaccaagttcgcaattcaattcgtgattttgcacttggccaaggcatt
accttttacgatttgcgtgagcatacaggtgttttgcgtaatttgattatccgcatttct
tctactggagagatgatggtgatcgttgtttttgcttatccggaagaggggcaggtcgaa
ttgctgatgaattatgtcaaggaaaagttcccacaaatcacttcgctattatatattgtc
aatcagaaacgcaatgatacgatctttgatcaagacatccatatctacgccgggcgtgat
ttcatttatgaagagatggaaggattacggtataaagttggacctaaatctttctatcaa
acgaattctgcacaagcttacgagttatataaaatcacccgtgattttgccgatctgaat
ggcgatgaattggtatatgatttgtatacgggtgctggtacgatagcaaattttgttgct
aagcaagcccgagaagttgtgggtgtagagtatgttcctacagctattgaagatgcacaa
gtcaattcgtccatcaataatattacgaatacaaagttctatgctggtgatatgaaggat
gttttgaccccttccttcattgccgaacatggtaaacctgatgtggtgattacagacccg
ccacgtgcaggaatgcatgctgatgttgtggcacgtttgttggaaatggaatctccgcgt
atcgtatatgtaagttgtaatgctgctacgcaggcgagagatcttctgttgttagcggag
aaatatgaggtaaagcgtattaaaccggtggacatgtttccgcatacgcaacatgttgag
aatgtcgttttattggaattgaaaaagttatag
DBGET
integrated database retrieval system
