KEGG   Sphingobacterium sp. R2: VXM68_09025
Entry
VXM68_09025       CDS       T10631                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
sprz  Sphingobacterium sp. R2
Pathway
sprz00010  Glycolysis / Gluconeogenesis
sprz00020  Citrate cycle (TCA cycle)
sprz00260  Glycine, serine and threonine metabolism
sprz00280  Valine, leucine and isoleucine degradation
sprz00310  Lysine degradation
sprz00380  Tryptophan metabolism
sprz00620  Pyruvate metabolism
sprz00630  Glyoxylate and dicarboxylate metabolism
sprz00640  Propanoate metabolism
sprz00670  One carbon pool by folate
sprz00785  Lipoic acid metabolism
sprz01100  Metabolic pathways
sprz01110  Biosynthesis of secondary metabolites
sprz01120  Microbial metabolism in diverse environments
sprz01200  Carbon metabolism
sprz01210  2-Oxocarboxylic acid metabolism
sprz01240  Biosynthesis of cofactors
Module
sprz_M00009  Citrate cycle (TCA cycle, Krebs cycle)
sprz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sprz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
sprz_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sprz00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    VXM68_09025 (lpdA)
   00020 Citrate cycle (TCA cycle)
    VXM68_09025 (lpdA)
   00620 Pyruvate metabolism
    VXM68_09025 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    VXM68_09025 (lpdA)
   00640 Propanoate metabolism
    VXM68_09025 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    VXM68_09025 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    VXM68_09025 (lpdA)
   00310 Lysine degradation
    VXM68_09025 (lpdA)
   00380 Tryptophan metabolism
    VXM68_09025 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    VXM68_09025 (lpdA)
   00670 One carbon pool by folate
    VXM68_09025 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sprz04147]
    VXM68_09025 (lpdA)
Enzymes [BR:sprz01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     VXM68_09025 (lpdA)
Exosome [BR:sprz04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   VXM68_09025 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_oxidored FAD_binding_2 DAO NAD_binding_8 HI0933_like GIDA Lys_Orn_oxgnase 3HCDH_N Thi4 FAD_binding_3 2-Hacid_dh_C Lycopene_cycl
Other DBs
NCBI-ProteinID: XCY07075
LinkDB
Position
complement(2168112..2169500)
AA seq 462 aa
MNYDIIVIGSGPGGYVAAIRAAQLGFKTAIIERESLGGICLNWGCIPTKALLKSAQVFEY
LNHAADYGINVQGGEADFEAIVKRSRGVAEGMSKGIQFLMKKNKIDVINGTAKIKKGGKI
DVKGADGSTKEYSAKHTILATGARSRELPNLPQDGKKIIGYRQAMTLPKQPKSMVVVGSG
AIGVEFAYFYNAIGTKVTIVEFMDRIVPVEDEEISKQLEKSLKKQGISVLTKSEVQSVDT
SGELSKVSIKTEKGVEVIEAEVVLSAVGIAPNIENIGLEEVGVKTDRGRVVVDDYYKTNI
EGVYAIGDIVKGQALAHVASAEGITCVEKIKGLHVEPIDYNNIPGCTYCSPEIASVGYTE
KAAKEAGYEIKVGKFPFSASGKASAAGAKDGFVKVIFDAKYGEFLGAHLIGANVTEMIAE
VVVARKLETTGHEMIKTIHPHPTMSEAIMEACADAYGEVIHL
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgaattacgacatcattgtaatcggtagtggtccaggcgggtatgttgctgccattaga
gccgctcagttagggttcaaaacagcgattattgaacgcgaatcattaggcggaatctgt
ctaaactggggctgtatccctacaaaagcattattgaaaagtgctcaggtatttgaatat
ttaaaccatgccgctgattacggcatcaatgttcaaggtggtgaggccgattttgaagct
atcgtcaaaagaagtcgcggagttgctgaaggaatgagtaaaggtatacagtttttgatg
aaaaagaataaaatcgacgttatcaatggtactgcaaaaattaaaaaaggtggtaaaatc
gatgttaaaggagcagacggttctactaaagaatattcggcaaaacatactatccttgcg
actggtgcacgttcgcgtgaattgcctaatttacctcaagatggtaaaaagataatcggt
taccgtcaggcaatgacactacctaaacagccaaaatctatggttgttgtagggtctggt
gctatcggtgtcgaatttgcttatttctataacgctattggaacgaaagtgactatcgtc
gaatttatggatagaatagttcctgttgaagatgaagaaatttcaaaacaattagagaaa
agtttaaagaaacaaggcatctctgttttaacaaagtctgaagttcaatctgttgataca
tcaggtgagttgagcaaagtttcaatcaaaaccgaaaaaggtgtagaagtgatcgaagct
gaggtggtattatcggctgttggtattgccccaaatattgaaaatataggattagaagaa
gttggtgtaaaaacagatcgtggacgtgttgtagtagatgattactacaaaaccaacatc
gaaggcgtatatgctatcggagatatcgttaaaggtcaagccttggctcacgttgcatca
gcagaagggattacttgtgttgaaaaaatcaaagggctacatgttgaaccgatcgattac
aacaacatccccggctgtacgtattgttcaccagaaattgcatctgtaggttataccgaa
aaagctgccaaagaagctggttatgaaattaaagttggtaagttccctttctcagcttct
ggaaaagcttcagctgcaggtgcgaaagatggctttgtaaaagttatttttgacgctaaa
tatggtgaattcctaggtgcacacctcattggagctaatgtaacagaaatgattgcggaa
gttgttgttgcccgtaaattggaaacaacaggtcacgaaatgattaaaacgatccatcct
cacccaacaatgagtgaagcgatcatggaagcttgtgctgatgcttacggtgaggtaatt
cacttataa

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