Sphingobacterium sp. R2: VXM68_09590
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Entry
VXM68_09590 CDS
T10631
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz03020
RNA polymerase
Brite
Enzymes [BR:
sprz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VXM68_09590 (rpoC)
Transcription machinery [BR:
sprz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VXM68_09590 (rpoC)
DNA repair and recombination proteins [BR:
sprz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VXM68_09590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XCY07182
LinkDB
All DBs
Position
2299638..2303915
Genome browser
AA seq
1425 aa
AA seq
DB search
MSYKKDNKIKSNFTSITISLASPETILERSSGEVTKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDMIIYYERYVVIQAGIKEEDGINFMDFLTEEEYLDILDTLPKENQYLDD
NDPQKFVAKMGAEALEDLLKRIDLDQLSYDLRHQAANETSQQRKNEALKRLHVVEAFRSS
RENIENRPEWMIVKIVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPHLKLHECGLPKDMAAELYKPFIIRKMIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPTLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAVLEAQILMLGAHNILNPANGSPITVPSQDMVLGLYYITKGRRTAGDHIVR
GQDMTFYSAEEVIIALNEKQIDLHAWIKVKTKVRQKDGSIVDTLLETTVGRVIFNQVVPD
EMGFVNELLTKKSLRNIIGEIVKTTGMARAAQFLDDMKELGYQTAFKGGLSFNLEDLNIP
AAKAELIQQATNEVEEVMNNYNMGFITNNERYNQIIDIWTRINNRLTAHVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGTSGGEIIENPILSNFKEGLSVLEY
FISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVVEQDCGGLRGIYTTALKDNDDVV
EPLFDRILGRTPLHDVFHPDTEELIVSANEDITEEIAETIEKAGIEGIEIRTVLTCESKR
GVCACCYGRNLASGKRVQLGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAADSSIIS
KYDGKIEFENVRTVSQTNDHGTHQVVLGRSGEVKIIDAHNKVVFQQNIPYGSQLFVEDGA
AVSKGDKLVEWDPYNAVIISEFAGKVEFDAIIEGVTFREESDEQTGHKEKVIIETRDKTK
NPSIKILDKSGEVIRTYNIPVGAHVAVANGVTVKEGGILVKIPRSTGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREMSIESRDGQIKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILSIKGPSAVQHYIVNGIQEVYRLQGVKINDKHFETIVHQMMQK
VNIEDPGDTRFLEKEAVNKWDFMEENDSLFDKKVVVDAGDSNTLRPGQIVSLRKLREENS
SLKRRDLKLVEVREAIPATSSPLLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NLLGLKENVIVGHLIPSGTGIRQYSNLIVGSREEYDQLLASKEED
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaagataataaaattaaaagcaacttcacgtcgattacgatcagcttg
gcttctccagaaactattctggaacgctcaagtggtgaagttacaaaaccagaaacgatt
aactatcgtacctacaagccggaacgtgacggtttattctgtgagcgtatttttggtccc
gtaaaggattacgaatgtcactgtggtaaatacaaacgtatccgctataaaggtatcgta
tgtgaccgttgtggtgttgaagtaactgagaaaaaagtacgtcgtgagcgtatgggacac
atcaacttggtggttcctgttgcacacatctggtacttccgttctcttcctaataaaatt
ggttatttattgggacttcctaccaagaaattggatatgatcatttactacgaacgttat
gtggttatccaagctggtattaaggaagaagatggtatcaactttatggacttcttgact
gaagaagaatatttagatatcttagataccctaccaaaagaaaatcaatatttagacgat
aacgatcctcaaaaattcgttgctaaaatgggtgctgaggcgttagaagatttgttgaaa
cgtattgatttggatcaattgtcgtacgatttacgtcaccaagctgctaatgagacttct
caacaacgtaaaaatgaggcattgaaacgccttcatgtagttgaagctttccgtagttca
cgtgaaaatatcgagaatcgtccagaatggatgattgtgaaaattgttccaatcattcca
cctgaattacgtcctttagtacctttggatggtggtcgatttgcgacttcggatttgaat
gacttataccgtcgtgtgattatccgtaacaaccgtctaaaacgtttgatcgaaatcaag
gctcctgaagtaatcttacgtaacgaaaaacgtatgcttcaagaagcggtagactctttg
tttgacaactcacgtaaagtgaacgctgttaagacagaaggtaaccgtgcattgaagtct
ttatctgatattttgaaaggtaaacaaggtcgtttccgtcaaaacttgttaggtaagcgt
gtggattattcggctcgttcggtaattgttgtaggtccgcacttgaaattacacgagtgt
ggtcttcctaaagatatggctgcagaactttacaaaccgtttatcatccgtaagatgatc
gagcgtggtattgtaaaaacagtaaaatcagctaagaaaatcgttgatcgtaaagatcct
gtggtatgggatatccttgaaaatgtattgaaaggtcaccctgtattgctaaaccgtgca
cctacgcttcaccgtttgggtattcaggctttccaacctaccttagtagagggtaaagct
attcaattacacccattagtgtgtacagcgttcaacgccgattttgacggtgaccagatg
gcagtccacttaccgcttggtaatgctgcagttttggaagcccaaatcttaatgttaggc
gcgcacaatatcttaaaccctgcgaatggttctccaatcacagtaccatctcaagacatg
gtattgggtctttattatattactaaaggccgtagaactgctggcgatcacatcgtaaga
ggtcaagatatgactttctattcggctgaagaggttatcatcgctttaaatgagaagcaa
attgaccttcacgcttggattaaagtaaaaacaaaagttagacaaaaagatggtagcatc
gttgataccttattagaaacaactgtaggtcgtgtgatcttcaaccaagttgttcctgac
gaaatgggatttgtcaatgaattgcttacgaaaaaatctttgcgtaatatcatcggtgaa
attgtgaagactacgggtatggcccgtgcagcacagttcttggatgatatgaaagaattg
ggatatcaaacagccttcaaaggtggtctttcgttcaacttggaagatttgaacattcct
gctgcgaaagctgaattgattcaacaagcaactaacgaggttgaagaagtaatgaataac
tataacatgggtttcattacaaacaacgaacgttacaaccaaatcatcgatatctggacg
cgtatcaacaacaggttgacggcgcacgttatggatattctttcgaatgataaccaaggt
ttcaactcagtttatatgatgttggattctggagctcgtggttcgaaagagcagatccgt
cagttatgcggtatgcgtggtttgatggcgaaacctcaaaaatcaggtacttctggtgga
gagattattgaaaacccgatcttatcaaactttaaagaaggtttgtcggtattggagtac
tttatctctacacacggtgcgcgtaaaggtcttgccgatacggcattgaaaacggcggat
gcgggttatttgactcgtcgtttacatgacgtagcgcaagatatgatcgttgtggaacaa
gattgtggtggtttacgtggtatttatacaacagcattgaaagataatgatgatgttgtt
gagccattgttcgatcgtattttgggtcgtacaccattgcatgatgtattccacccagat
acagaggaattgatcgtttctgcaaacgaagacatcacggaagaaattgctgagactatt
gaaaaagcaggtatcgaaggaattgagatccgtacggtattaacttgtgaatctaagcgt
ggtgtgtgtgcatgttgttacggacgcaacttggcgtcaggtaagcgcgttcagttaggt
gaagctgtgggtgttatcgctgcgcaatcaattggtgagccaggtacacagttgacactt
cgtacattccacgtgggtggtacggcatcgaacattgctgctgattcaagtatcatttcg
aaatacgatggtaaaatcgaatttgaaaatgtacgtacagtttcgcaaacaaacgatcat
ggcacgcatcaggtggtcttaggccgttctggtgaagtcaaaatcatcgatgcacataat
aaagttgttttccaacaaaatattccttacggttcgcagttgttcgttgaagatggtgcc
gctgtatcaaaaggtgataaattggtcgagtgggatccatataatgcggttattatttct
gagtttgccggtaaggttgaatttgatgctatcatcgaaggtgttaccttccgtgaagaa
tcagatgagcaaactggtcacaaagagaaagtaattatcgagacacgtgataaaacgaaa
aacccgtccattaagattttagataaatctggagaagtgatccgtacatacaatattcca
gtgggagcacacgttgctgtggccaatggcgtgactgtaaaagaaggtggtatcttagtt
aagatccctcgttctacaggtaaaacgagagatatcaccggtggtctaccacgtgtaaca
gagttattcgaagcacgtaatccttctaatcctgctgttgtgacagaaatcgacggtgtg
gtaacattaggtggtgtgaaacgtggtaaccgtgagatgtctatcgaatctcgtgatggt
caaatcaagaaatatttggtacctctttccaaacatatccttgttcaggataatgacttt
gtgaaagctggtatgccattgtcggatggttcgatctctccagcggatatcttatcgatt
aaaggtccttcagcggtacaacattacattgtgaatggtatccaagaggtataccgtctg
caaggtgtgaagatcaacgataaacactttgaaacgatcgttcaccaaatgatgcaaaaa
gttaacattgaagatccaggggatactcgtttcttagaaaaagaagctgtaaacaaatgg
gatttcatggaagaaaacgattccttgtttgacaaaaaagtcgttgttgacgcaggagac
tctaatacactacgtccaggacaaattgtttctttacgtaaattaagagaggaaaactct
agtctgaaacgtcgtgacttaaaacttgtggaagttcgtgaagcaattccggcaacgtca
agtccattgttgcaaggtattaccagagcttcattgggtacgaaatcgttcatctctgca
gcctctttccaagagactacaaaagtgttgaacgaggctgctatcgctggtaaacgtgat
aacttattaggtttgaaagaaaacgtaattgttggtcacttgatcccttctggtacaggt
attcgtcaatacagcaacttaatcgtaggttctcgtgaagagtacgatcaattgttggct
tcgaaagaagaagattaa
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