Sphingobacterium sp. R2: VXM68_10090
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Entry
VXM68_10090 CDS
T10631
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VXM68_10090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprz03019
]
VXM68_10090
03400 DNA repair and recombination proteins [BR:
sprz03400
]
VXM68_10090
Enzymes [BR:
sprz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VXM68_10090
Messenger RNA biogenesis [BR:
sprz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VXM68_10090
DNA repair and recombination proteins [BR:
sprz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VXM68_10090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
XCY07275
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All DBs
Position
2424466..2426367
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AA seq
633 aa
AA seq
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MTQDSISILRQYWGFDSFRPLQEEIIQSVISGKDTLALLPTGGGKSICFQVPALMLEGIC
IVVTPLIALMKDQVEHLRKNGIQAVAIYSGMKKREVDITLDNCVYGKIKFLYLSPERLYN
DIVRERIRFMNVNLFAIDEAHCISQWGYDFRPPYLELAKLRELHPKVPFLALTATATPRV
ITDIQQKLDFSKENVFVKSFLRDNLAYMAIEEEDKMGRMVRIIHKLGGCGIVYVRNRRET
QEVARILVNNGISADYYHAGLSGQERDQKQHVWMTNVVRVIVATNAFGMGIDKPDVRFVI
HLDLPDSLEAYYQEAGRAGRDGKKAYPVILYQKTDEQKLLDNLQASFPDISFIQQTYHYL
CNHFQIPYGSGEGVTVDFDVVTFAKKYQLPLVPVMSALKFLERDTWLVLSEAVTIPSRFK
FEIDSAELYKFQVQYAKYDKLVKAILRSYGGVFENFILINEYEFAGKLGLPYGRVVELLK
SLETLEIATYLPSTDSPQLTFLQNRVDYKHLHIDHVFIRDRHQVKEEEVNGMINYIERSN
CRSQSLLLYFGEKNAGFCEVCDLCLIRNHQAKQRTNIKAEIKSSLLAGAKNIHDLVGSLT
LGTEKQRIEIIRDLLDAEKIRLEDNLYSWNTLF
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagatagtatatcaatcttaaggcaatactggggatttgactcatttagaccc
ctgcaggaagaaattattcaatctgtcatttctggtaaagataccttggctttattgccg
acaggtgggggaaaatcgatttgttttcaagtacctgcattgatgctggagggaatttgt
atcgtggttacgccgcttattgcgttgatgaaagaccaggttgagcatttgagaaaaaat
ggaattcaggcggtcgcaatttactcgggtatgaagaagagagaggtggatattaccctg
gataactgcgtttatggaaaaataaaatttctctatctctctcctgaaaggttgtacaat
gacatcgtgagagaacgtatacgatttatgaatgtcaatctttttgcgatagacgaagca
cattgtatttcccaatggggatatgattttagaccgccttatttagagttagctaaatta
cgtgaattacatcccaaagtgccttttttggctcttacggccactgcaacgccgcgtgtg
ataaccgatattcagcagaaactcgatttttcaaaggaaaatgtattcgtaaaaagcttt
cttcgggataatctggcttatatggctattgaagaggaagataagatgggccgcatggta
cgcatcattcataaattgggcggatgcggtattgtttatgtaagaaaccgtcgtgaaaca
caagaagtagcgcgtattttagtcaataatgggatttctgcggattattatcatgcaggg
ctttctgggcaagagcgggatcagaaacagcatgtgtggatgacaaatgttgttcgtgtt
atcgtcgctacaaatgcctttggcatggggatcgataaacctgatgtgcgcttcgtgatt
cacctggatttgcccgattcgctggaagcctattatcaagaagccggtagggcagggagg
gatggaaaaaaagcttaccctgttattctttatcaaaaaacagatgagcagaaactactg
gataatctgcaggctagttttccagatatttcctttattcaacaaacctatcactacctt
tgtaatcattttcagattccttatggttctggtgagggagtgacagtggattttgatgtc
gttacatttgctaaaaaatatcagctccccttggtgccagtgatgagtgcactgaaattt
ctggagcgggatacctggttggttttgtcggaggctgttacaatcccttcacgctttaaa
tttgagattgacagtgctgagctatataaatttcaggttcagtatgcaaaatatgataag
ctcgtcaaggctattttacgtagctatggcggcgtatttgagaatttcatattaatcaat
gaatacgaatttgcaggaaaattaggtttaccatatggtcgtgtcgtagagctattgaaa
tcgttagaaacgttggaaatagcgacttatttgccttctacagattcaccgcaattgaca
ttcctacagaatcgggtcgattataaacatctgcatatcgaccatgtctttattcgggat
cgccatcaggtgaaggaagaggaggtcaatggcatgattaattatatcgagcgaagcaat
tgccgtagtcaatcgttgttattgtattttggtgagaaaaatgcggggttctgtgaagta
tgtgatttatgcctgatccgtaatcatcaggcaaagcaacggacaaatataaaagccgaa
ataaagagcagtttacttgccggtgcgaagaatatccatgatttggtgggtagtttaaca
ttaggtacggaaaagcaaagaatagagattattcgtgatctgctggatgcggaaaaaatc
cgcctggaggataatctctactcttggaatactttattttaa
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