Sphingobacterium sp. R2: VXM68_13245
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Entry
VXM68_13245 CDS
T10631
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VXM68_13245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sprz03021
]
VXM68_13245
Transcription machinery [BR:
sprz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VXM68_13245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r3
Sigma70_r4_2
UPF0122
PgaD
Motif
Other DBs
NCBI-ProteinID:
XCY03609
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Position
complement(3223842..3224702)
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AA seq
286 aa
AA seq
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MRQLKITQSITNRESQSLDKYLHEIGKVDLITAEEEVELAQRIREGDQVALEKLTKTNLR
FVVSVAKQYQNQGLTLGDLINEGNLGLIKAAKRFDETKGFKFISYAVWWIRQSILQAIAE
QSRIVRLPLNQVGSLSKISKAFSKLEQEYEREPSPEELADILETTVDKVSDTLSNSGRHV
SMDAPFVQGEENTLLDVLENHDPDTDSSLIDESLSEEIKRSLATLTEREREIIVLFFGLG
SNHQLSLEEIGEKFSLTRERVRQIKDKALQRLRHTSRSKILKSYLG
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgagacagctcaaaattacacaatctattaccaatcgtgagtcacagtctttggacaaa
tacttacacgaaattggtaaagtagacttaattacagcagaagaagaagttgaattagca
caacgcatccgtgaaggtgaccaagttgccttggaaaaattgactaaaaccaaccttcgt
ttcgtcgtatcagtagcaaaacaatatcaaaatcaaggtttaaccttaggtgatttaatc
aacgaaggtaacttgggcttaattaaagcagctaaacgttttgacgaaacaaaggggttt
aaatttatttcttatgcggtttggtggattcgccaatctattcttcaggcaattgctgaa
caatcacgtatcgtacgtctgccattgaatcaagtaggttcactgagcaaaatcagtaag
gctttctcaaaactagaacaagaatacgaacgagagccgtctccagaagaattagcagat
attcttgaaactacggtagacaaagtttcggataccctaagtaactctgggcgtcacgta
tctatggatgctccctttgttcaaggtgaagaaaacacacttttggacgtactggaaaac
catgatccagacacagacagttctttgatcgatgaatcactatccgaagaaatcaaacga
tcattggctacattaacagaaagagaacgtgaaattatcgtacttttctttggattaggt
tccaaccaccaactgtcgcttgaggaaatcggagagaaattcagtttgacacgtgaacgc
gttcgtcagatcaaagacaaagcccttcaacgtttgagacacacttcaagaagcaaaatc
ttaaaatcctacttgggttaa
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