Sphingobacterium sp. R2: VXM68_13350
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Entry
VXM68_13350 CDS
T10631
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VXM68_13350 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprz03019
]
VXM68_13350 (rny)
Messenger RNA biogenesis [BR:
sprz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VXM68_13350 (rny)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF4954
PFF1_TM
Motif
Other DBs
NCBI-ProteinID:
XCY03629
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Position
3250751..3252304
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AA seq
517 aa
AA seq
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MDIAIYSIISLIVGVVIGRYLLVLLFKKQEQEAKDKVNSILKDAEQEGELIKKKRLLEAK
EKFLQLKSEHEKEVNQRNNAINQKENTLRQKEQSINQKLENINRDKQEVDTKKKQLDKLV
ELNEKKSEEVESLKLQQIKQLESIAGVTADEARNQLVDSLREEARSQAMIQIKDIVDEAK
LTATKEAKKVVIQTIQRTATESAIENTVSIFNIENDEIKGRIIGREGRNIRALEAATGVE
IIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEVVAKTRTQIEDEIVEIG
ERTAIDLGIHGLHPELIRMVGRMRYRSSYGQNLLQHSREVANFAATMAAELGLNVKHAKR
AGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPDVCNAIGAHHDEIEMTALISPIVQAC
DAISGARPGARREVVESYIKRLKELEDLALSYPGVEKTFAIQAGRELRVIVESERVSDAQ
SEILAADISNRIQTEMTYPGQIKVTVIRETRSVSYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggacatcgcaatttatagcataatttctctgattgttggtgttgttataggtcgttat
ctattggttctgttgtttaaaaaacaagaacaggaagccaaagataaggtaaatagcata
ctgaaagatgcagagcaggaaggggaactcatcaagaagaaacgcctgttggaggctaaa
gaaaagttccttcaattaaaatctgaacacgaaaaagaagtgaaccaacgtaacaatgcc
atcaatcaaaaggaaaatacgttgagacaaaaagagcagtcaattaaccaaaaactggaa
aacatcaaccgcgataagcaagaggtggatacaaagaaaaagcaattggataagttggtt
gagttgaacgaaaagaaatccgaagaagtagagtccttaaaattacagcagattaagcaa
ctggagagcatcgctggtgtaactgcagacgaagcgagaaaccaattggtagattcttta
cgtgaagaagcgcgttcacaagctatgattcaaatcaaggatatagtggatgaggcaaaa
ctgacggcgactaaagaggctaagaaggtagtaatccaaacgatccaacgtacagctact
gaatcggccatcgaaaataccgtttcaattttcaatatcgaaaatgacgaaatcaaaggc
cgtattattggtcgtgagggacgtaatattcgtgcgctagaagctgcaacaggagttgaa
atcatcgtagatgataccccggaagcaattattctctctggttttgatccggtacgacgc
gaaattgcgcgtctggccttacaccgtttggtaaccgatggtcgtattcacccagcccgc
attgaagaagtggtcgcaaaaacacggactcaaattgaagatgagattgtagaaattggc
gagcgtacagcgattgatttaggaatacatggtttgcaccccgaattgatccgtatggta
ggacgtatgcgttaccgttcgtcttacggacagaatcttttacaacactctcgtgaagtg
gctaattttgcggcaacaatggctgcagagcttggcctgaatgttaagcacgcaaagcgc
gcagggttactacatgatatcggtaaagtgcctgatgataatcctgagttgccacacgct
attttgggaatgcaacttgctgagaaatacaaagaacatcctgatgtatgtaacgccatc
ggcgctcaccacgatgagatcgaaatgacagccttaatatctccgatcgttcaggcttgt
gatgcaatttctggggcacgcccaggtgcacgccgcgaagtggtagaaagctatattaag
cgtctaaaagagctggaagatttggcgctatcttaccctggtgttgaaaaaacttttgca
atacaagctggacgtgagcttcgtgtgatcgtggaaagtgagagagtatctgatgcgcaa
tcggaaatattggccgcggatatttccaaccgtatccaaacggaaatgacttatccggga
caaattaaagttactgttatccgcgagacgagatcggtgtcttacgcaaaatag
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