Sphingobacterium sp. R2: VXM68_16690
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Entry
VXM68_16690 CDS
T10631
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz03030
DNA replication
sprz03430
Mismatch repair
sprz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VXM68_16690
03430 Mismatch repair
VXM68_16690
03440 Homologous recombination
VXM68_16690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sprz03032
]
VXM68_16690
03400 DNA repair and recombination proteins [BR:
sprz03400
]
VXM68_16690
Enzymes [BR:
sprz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VXM68_16690
DNA replication proteins [BR:
sprz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VXM68_16690
DNA repair and recombination proteins [BR:
sprz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VXM68_16690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
DUF7508
GIY_YIG_2
BDI_1685-like_C
Motif
Other DBs
NCBI-ProteinID:
XCY04280
LinkDB
All DBs
Position
complement(4039427..4040887)
Genome browser
AA seq
486 aa
AA seq
DB search
MSINQSKKQEFAIVDIETTGGYAKSSRITEVAIVIHDGNQVLERWETLINPGKEIPNSIF
ALTGIDNDMVKDAPTFEEVAERIYAMLKDRIFVAHNVNFDYSFIRFQLQESGFEWSAIKL
CTVRYARKIKPGLLSYSLGRLCDYLDIPIENRHRAGGDADATAILFAYLKVLDTEQIFQE
MIKHKAIDQRFPPHLNPLAYEQLPNEAGVYYFHDKDGKVIYVGKAVNIKKRVLSHFTGNN
IQAQRQNFLKEIHHISYECCGTELMALLLECAEIKRFWPKYNRALKRYEPKFGLFSYEDQ
NGYLHLAIGKTNRGQPCIQVFQREYDAIQLLQTFIQQDAINPQFCQFGQASLSTKSIKKD
VLPDRDLHNTRIERCIEEWLVQRPSYVLIDKGRHSEEKSCIVIENGTFYGMGYIDQCCQY
DGFEDIRAQVKRYPSNHYMMELVKMAAARHPAKIHFLTESTFLPNTAAEPDSVYEKLEPN
SLFNLS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgagtataaatcaaagcaaaaaacaagagtttgccatcgtggatatagagactacaggt
ggttatgcaaaatcgagtcggatcacggaggttgctattgttattcatgatggtaaccaa
gttcttgaacgctgggaaacattaataaatccaggaaaggaaattcctaactccattttt
gcgcttactggcatcgataatgatatggtaaaggatgctccaacatttgaagaagttgcc
gagcgcatttatgcaatgctgaaagaccgtatttttgttgcgcataatgtcaattttgat
tactcattcatccgttttcagcttcaggaatcgggatttgaatggtcagcaataaaatta
tgtacagtacgctatgcgcgaaaaataaagccggggttattatcctatagtttgggacgt
ttatgtgattatttagatataccaatagaaaataggcatcgtgcaggtggcgatgccgat
gcgactgcaattctttttgcttatttgaaagttctggatactgagcagatctttcaggag
atgattaaacacaaggcgatagatcaacgttttccgccgcacttaaatccattagcgtat
gaacaattgccgaatgaggctggggtctactattttcacgataaagatggaaaagtaatt
tatgttggaaaggctgtaaatataaaaaaacgggtattgtcccatttcactggaaataac
attcaagcacaaaggcagaattttttaaaggaaattcatcatatcagttatgaatgctgt
ggtacggagcttatggcgctacttttggaatgcgcggagattaaacggttttggccaaaa
tataatagggcgctgaagcggtacgaaccgaagttcggattgttttcctatgaagatcaa
aacggctaccttcatcttgccattggtaagacaaataggggacagccatgtattcaagtg
ttccagcgtgaatatgatgcaatacagttgctccaaacattcattcaacaagatgctata
aatccgcaattctgtcagtttgggcaagccagtttgtcaacaaaatccataaagaaggat
gtcttgccggatcgtgacctacacaacaccagaattgaacgctgtattgaggagtggttg
gtacaacgtccatcgtatgtactgatcgataagggacgtcattctgaagagaaaagctgt
attgttattgaaaatggtactttctatggcatgggctatattgatcaatgctgtcaatat
gatggttttgaagatataagagcacaggttaaaagatatccaagtaatcattacatgatg
gaattagtcaaaatggcagcagcaaggcatcctgctaaaatacattttttaacagaatcg
acttttttaccaaatactgctgcagaaccggattccgtctatgaaaaattagaaccaaat
agtctttttaacttaagttaa
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