Sphingobacterium sp. R2: VXM68_18695
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Entry
VXM68_18695 CDS
T10631
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VXM68_18695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprz03019
]
VXM68_18695
Enzymes [BR:
sprz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VXM68_18695
Messenger RNA biogenesis [BR:
sprz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VXM68_18695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
UTP25_NTPase-like
ERCC3_RAD25_C
DEDD_Tnp_IS110
PhoH
HEM4
Motif
Other DBs
NCBI-ProteinID:
XCY04669
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All DBs
Position
4481875..4482999
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AA seq
374 aa
AA seq
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MEFKQLSLIDPLLKAITETGYTHPTAIQQKAIPVVLKGNDLIGCAQTGTGKTAAFALPLL
QRLEETKTSGKFVPIRALILTPTRELAIQIGDNINFYRKYLKVNYCTIFGGVSQEKQVKE
IKKGVDILVATPGRLLDLVNQKIVFLDKIEMLVLDEADNMLDMGFIHDIKKILTKIPSKR
QTLFFSATMPPNIRKFAHGILNKPFEVDVTPVSSTAEKVNQSVFFVEKKEKIKLLTVLLK
KLKQERTIVFSRTKHGADKIVKLLAKNGLRAAAIHGNKSQNARQKALGEFKDNHLKILIA
TDIAARGIDIEQLPLVINYDLPNVPETYVHRIGRTGRAGLEGKAISFCDVEERPYLADIE
KLIGLKIKIEKLNK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaaacaactcagtttaatcgatccgcttttaaaagcaataacagaaacaggc
tatacacatcccacagcaattcaacaaaaggctattccagttgtactgaaaggtaacgat
ctgattgggtgtgcacaaacaggtacagggaagactgccgcttttgcacttcccctttta
caacgtcttgaagaaaccaagacgtcgggtaaattcgttccgattagagcgctgattctc
accccgacgcgtgagttggctattcaaatcggagataatataaatttttaccgaaaatac
ctaaaagtaaactattgcaccattttcggcggagtaagccaagaaaaacaggtcaaagaa
ataaaaaagggcgttgacatcctagtagctaccccggggcgcttactggatctcgtaaat
cagaagatcgtgtttctagataagatcgaaatgcttgtcctggacgaagccgacaacatg
ctggacatgggctttatacacgacataaaaaagattctgaccaagattccgtcaaagaga
caaacattatttttctcggcaacaatgcctcccaatatccgtaagtttgcgcatggaata
ttgaataaaccttttgaagttgacgttactccggtaagctcaacagcagaaaaagtaaat
caatcggtatttttcgttgaaaagaaggagaaaatcaaattgctaacggtcttattaaag
aaacttaagcaggaacgtacgatcgtattctccagaacaaaacacggagccgataaaatt
gttaagctacttgcaaaaaatggtttgagagcagcagccattcacggaaataaatctcaa
aacgccagacaaaaggcgctgggtgaatttaaagacaatcatctaaaaatattgattgcc
accgatattgctgcaagaggaattgatatcgaacaacttcccctcgttatcaattatgac
ctcccgaacgtacctgaaacctatgttcatcgcatcggaagaacaggaagggccggactc
gaaggaaaagcaatctcgttctgtgatgtggaagaaagaccttatctggccgatattgag
aaactgatcggactaaagatcaaaatagaaaaattaaataaatag
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