Sphingobacterium sp. R2: VXM68_19775
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Entry
VXM68_19775 CDS
T10631
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz02020
Two-component system
sprz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VXM68_19775 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VXM68_19775 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sprz03021
]
VXM68_19775 (rpoN)
Transcription machinery [BR:
sprz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VXM68_19775 (rpoN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
MarR
Mu-transpos_M
LacI
Motif
Other DBs
NCBI-ProteinID:
XCY04880
LinkDB
All DBs
Position
4722339..4723805
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AA seq
488 aa
AA seq
DB search
MLKQTLQQKLLQKLSPQQIQFIKLLQVPTVSLDARIKEELEENPALEDGSLTNMTDPIEE
YPDKDPDDNFDNEEGFDSDDFSLEDYIQEDDFKDYGNGYEYGDDDDDRKEMPVAIQHSFY
EQLQQQLDLLALDDKHFLIGQQIIGSLDDDGYLRRPIINLVDDLAFGQNVMTEENEVLDI
LKVIQDFEPAGIGARDLQECLLIQLQKKDTQNPTIKLAIKVVANYLEEFTKKHYDKLEKS
LGISSEDLKNVVNEILKLNPKPGDSGAVAGKQLHIIPDFHISNNDGILHLTLNGRNAPEL
RISRDYQHMFEHYEKSDQRDKKMKEAVQFVKQKLDSAKWFIDAIKQRQQTLLKTMNAIME
YQYDYFLTGDDRKLKPMILKDIADKIDMDISTVSRVANSKYVQTEFGTFLLKSFFSEAIQ
TDSGEEVSNKEVKKILEECISKENKRKPLADEKLTEILKEKGYNIARRTVAKYREALNIP
VARLRKEL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacaaacattacaacaaaagctattacagaaattgtctccgcaacagatacag
tttataaaattgttgcaggttccgactgtttcattagatgcaagaatcaaggaagaatta
gaggaaaaccctgcgttagaagatggtagcttgactaatatgaccgatcctatagaagaa
tatcctgacaaagatcccgatgataattttgacaatgaagagggattcgactcagacgac
tttagcttggaagactatatccaggaggacgattttaaagattatggtaacggctatgag
tatggcgatgatgacgatgatcggaaagaaatgcctgtcgcaatccagcattcgttttat
gaacagttacaacagcaattagacctgttggctttagatgacaaacattttctaattggt
caacaaattattggcagccttgatgacgacggatacttacgccgtcctattatcaatctt
gtagacgatctagcgtttggccaaaatgtaatgactgaagaaaatgaagtgcttgatatc
ttaaaagtcattcaagattttgagcctgccggaattggcgcccgggatttgcaagaatgc
cttttgatccagctgcaaaaaaaagacactcaaaatcccactattaaacttgctattaaa
gtggtagcaaactaccttgaagaatttaccaaaaagcattatgataaattagaaaaatca
ttgggcatttcgtcggaggatttaaaaaatgtagtgaatgagatcctaaaacttaaccca
aagcctggagactctggcgcagtggctggtaaacagcttcatattatccccgatttccat
attagtaacaatgatggtattctacatttgactttaaacggccgaaacgcacccgagctc
cgtataagccgtgattaccagcacatgttcgagcattatgaaaaatcggatcaaagggat
aagaaaatgaaagaagctgtacaattcgtcaagcaaaaacttgattcagcaaaatggttt
attgatgcaatcaaacaacgccagcaaaccttactcaaaacaatgaacgccatcatggaa
tatcaatatgattatttcctgaccggtgatgatcgaaagctaaagcccatgatattgaaa
gatattgcggataaaattgacatggatatatcaacagtatcgcgggttgcaaattcaaaa
tatgtacagacagaattcggcacttttctcctaaaatcatttttctccgaagctatccaa
acagactctggggaagaggtatccaataaggaagttaaaaaaatattggaggagtgtatt
tcaaaagaaaataagagaaaaccactagctgatgaaaagcttactgagatcctgaaagaa
aaaggctataatattgcgcgacgaacggtagcaaaatatcgggaggcattgaatatccct
gtagcaagattacgaaaagagctctaa
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integrated database retrieval system
