Sphingobacterium psychroaquaticum: E2P86_01035
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Entry
E2P86_01035 CDS
T05967
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spsc
Sphingobacterium psychroaquaticum
Pathway
spsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E2P86_01035 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsc03400
]
E2P86_01035 (mfd)
Enzymes [BR:
spsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E2P86_01035 (mfd)
DNA repair and recombination proteins [BR:
spsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E2P86_01035 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBQ39811
LinkDB
All DBs
Position
complement(238824..242162)
Genome browser
AA seq
1112 aa
AA seq
DB search
MGIQDVLTKYAQSEQVKLLVKAIQGKNPKIQLKGLIGASDAIVAAAAYTVQERPFIFILP
THEEASYFLSDLESILDKQILFFPASFRKAYEFTQTDASHVLQRAETLSALNHISELPKI
VVTYPEAIAEKVINREDLEKNTLAITQNTKLSIDFINEFLYEYDFERVDFVYEPGQFAIR
GGIVDIFSFSNDLPYRVEFFGDEIESIRTFDMETQLSVNKIHTVTIVPNVQAKFLSNNHI
SLLEYVDRDAVIWIKDVQFTLDIMKDGYKKASEFWKALPEKDILVHADWVDPRVTFTTDR
GFGELMFDFPNVEFGKHFYYKAEETLKFDIHPQPSFNKDFTLLIHNFKENVKHGIENLIF
SDSTKQVERIYSILEDIDKSVTFTPIHKGLREGFRDDETKLACYTDHQIFDRYYKYKRKK
GYERSQAITLKELRDLKPGDYITHIDHGVGKYAGLEKVEVNGKTQEMIRLVYADNDLLYV
NINSLNRISKYSGKEGTVPKMNKLGTDAWEKLKKTTKRKVKDIARDLIKLYAKRKSQTGN
AFSPDTYLQNELEASFLYEDTPDQEKATADVKRDMESPHPMDRLVCGDVGFGKTEVAIRA
AFKAATDNKQVAVLVPTTILALQHFRTFSERLKEFPVTIDYINRFKSTKQIKDTLARLAE
GKIDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVAVKEKLKVMRANVDSLTLTATPIPR
TLHFSLMGARDLSIISTPPPNRQPVQTELHVFNETLIQEAVAFELDRNGQVFFIHNRVAD
LKQLGGMIQKLVPGARVGIAHGQLEGDALEDVMLKFINHEFDVLVATTIIEAGLDIPNAN
TIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTNEAYKRLSALEEFSELGS
GFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYNKILDEAVQELKDDEFSELFAEDKNR
KYVTFTQIDTDLEVMIPDAYVTNIGERYNLYNEIAKLENETQLIAFQKELEDRFGPVPQP
VFELFNTLRLQWYGKEIGFEKISFKKNTLKGYFVSNPKSSYYESDQFGKVLAFVQAHPAI
SNMKEVKGQLRLAISNVNNITYALHLLKEMSN
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
gtgggtattcaagacgtcttaacgaaatatgctcaaagcgagcaggttaaattattggtt
aaagccattcaggggaaaaatcctaaaatacaactaaaaggactgattggcgcatcggat
gccatagttgccgcagccgcatataccgtccaggaacgtccctttatcttcattctacct
acacatgaagaagcatcctattttttgagtgatctagaaagcatcctcgataagcagata
cttttctttccagcatcttttcgtaaggcttacgaatttacgcaaacagatgcctctcat
gttctacaacgtgcggaaaccttaagcgcattaaaccacatctcagagttacctaaaatc
gtagttacttatccagaagcaattgctgaaaaagtaataaaccgggaggatctagagaaa
aacaccttagcaattactcaaaatacaaagctcagcatcgatttcatcaatgaattttta
tatgagtatgatttcgagcgggtagatttcgtttatgaaccggggcaatttgcaataaga
ggcggtattgtcgatattttttccttttcaaatgatctaccctaccgcgttgagtttttt
ggtgacgagattgagagcattcgcacatttgacatggagacacagctctccgttaataaa
atccatacggtaaccatcgtaccaaatgtacaagcaaagttcctaagcaataatcatatc
tcgctcttagaatacgtagatcgggatgccgtaatatggattaaagatgttcaatttacg
ctcgacatcatgaaggatggttacaaaaaagcatctgaattctggaaagcactgccggag
aaagatattctagtccatgcagactgggtggatcctcgggtcactttcaccacagatcgt
ggttttggcgagctcatgtttgattttccaaatgtagaatttggaaaacacttctactat
aaagcggaagaaacactcaaatttgatattcatccgcaaccatctttcaataaggatttc
acccttttgatccacaatttcaaagagaatgtaaagcatgggattgaaaacctcatcttt
tccgactcgaccaaacaggttgagcgaatttatagtattttagaggatattgataaatct
gtaaccttcacgcccattcataaaggactacgggaagggtttagagacgacgagacaaaa
ctcgcttgttatacagaccaccaaatttttgatcgctactacaaatacaagcgtaaaaaa
ggatatgagcgctctcaggctattacactaaaggaactgcgggaccttaaacccggcgac
tatatcacgcatatcgaccatggtgtcggtaagtatgcaggactggagaaagttgaagta
aatggcaagacacaggaaatgatccggttagtctatgcagataatgacctgctttatgtc
aatatcaactccctaaacagaatatcaaaatactcaggaaaagaaggaactgttccaaaa
atgaacaagcttggaaccgacgcctgggaaaaactaaagaaaacgaccaaaaggaaagtt
aaagatattgcacgtgatctgattaagctctatgcaaagcggaaatcgcaaacaggtaac
gcctttagtccagatacctacttacaaaatgagcttgaggcatccttcttgtatgaggat
acaccagatcaagaaaaggcaacagctgatgtaaaacgtgatatggaatcccctcatcca
atggataggctcgtatgtggcgatgttggtttcggaaaaacagaagttgctatccgtgcg
gcatttaaagccgcaacagacaacaaacaagtagcagtccttgtccctacgaccattcta
gccttgcaacatttccgaacctttagtgagcggctgaaggaatttcctgtaacgatagat
tatataaatcgatttaaatctaccaaacagatcaaagacaccttggctcgtcttgccgaa
ggcaagatcgatattatcattggcacacaccgactcgtaagcaaggatgtgaagttcaaa
gatttgggcttaatgattatcgatgaagaacagaaatttggggttgccgtcaaagaaaag
ctaaaggtgatgcgtgcaaatgtcgattccctaaccttgacagcaacgccaatcccacgc
accctccacttttcattaatgggcgcccgtgacttaagcatcatatccacacctccacct
aatagacagccggtacaaacggaactccacgttttcaatgagacgttgatacaagaagcc
gtcgcttttgagttagaccgtaacggacaggtgttctttattcacaacagagtagccgat
ctaaaacaattgggcggcatgattcaaaagctcgttcccggagcacgtgtcggtattgca
cacggtcagctagagggcgatgccctggaagatgttatgctgaaatttatcaaccatgag
tttgatgtactcgtagccactaccattattgaagcagggctcgatatccccaacgcaaat
acaattatcattaaccatgcacatatgtttggattaagcgaccttcaccagatgcgtggt
cgggttggacgttccaataaaaaagctttctgttacctcttaagtccaccactttcgact
ttgacaaacgaagcctataaacgtctatccgcactggaggagttttctgaactaggatca
ggtttcaatgtggcaatgcgagacttagatatccgaggctccggaaacctcctgggtgcc
gaacagtcgggttttattgctgagattggttttgaaatgtacaataaaatattggacgaa
gctgttcaagagcttaaggatgacgaatttagtgagctattcgccgaggacaaaaaccga
aagtacgtgacttttacacaaatagacacagacctcgaggttatgattccagacgcctat
gttaccaatatcggcgaacgatacaatctgtataacgaaattgcaaaactagaaaacgaa
acgcaactaattgcctttcaaaaagaactcgaagaccgttttggtcccgtaccacaaccc
gtatttgagttatttaataccctccgcctgcaatggtatggtaaagagattggatttgaa
aaaatatccttcaagaaaaatacacttaaaggctattttgtgagcaatccaaaatcaagc
tattatgaatctgatcagtttggaaaagtactagcttttgtgcaagcacatcctgcgata
agcaacatgaaagaagtgaagggacaattacggttagcaataagtaatgtaaataatatt
acgtatgccttacatttactcaaggagatgagtaattaa
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