Sphingobacterium psychroaquaticum: E2P86_03550
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Entry
E2P86_03550 CDS
T05967
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spsc
Sphingobacterium psychroaquaticum
Pathway
spsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2P86_03550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsc03019
]
E2P86_03550
03009 Ribosome biogenesis [BR:
spsc03009
]
E2P86_03550
Enzymes [BR:
spsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E2P86_03550
Messenger RNA biogenesis [BR:
spsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E2P86_03550
Ribosome biogenesis [BR:
spsc03009
]
Prokaryotic type
rRNA helicases
E2P86_03550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QBQ40271
UniProt:
A0A1X7IZK8
LinkDB
All DBs
Position
complement(839727..841547)
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AA seq
606 aa
AA seq
DB search
MNPFLELGIRHEVVNAITEIGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP
LLELIDFSQKHPQALVLCPTRELCLQIAKDIEKFAKFIDNVNVVAVYGGANISDQLRQIR
RGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPDTKKT
WLFSATMPREVRRIAQNYMSNPFELTVGTKNTGNANIEHHYYLIKAKDKYAAFKRIVDFY
PEIFGIVFCRTKIETQEIAEALVRDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATD
VAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHIEKI
IGKSFEKKEVPQGTEVCEKQLFALVDKVHNVDINEEQIAPFLPKIMESMEDLSKEDIIKR
FASLEFNRFLEYYQNAPDLNIEAREGAGRERGDRDDRRSRQGSKGYTRLFMNLGSVDEFS
RGDMLGFICNTAKISGKSIGKIDLKGVFTFFEVEDAEVNRVFDGFKDIDFNGRQVRIEVS
GEGGGRSEGGRGGRPRGGDRGPRSGGGDRRDRNRGERSGGGSRGGERREGGFRDFSGKRQ
GSRSKY
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatttttagaattgggaatccgtcatgaagttgttaatgccatcactgagatt
ggttttgaaaaaccatctcctattcaggaaaaagccattcctgttttattgactggtaac
gacgattttgtcggattagcccaaaccggcacaggaaagacagcggcatttggtcttcca
ctattagagttaattgacttttctcaaaaacatcctcaagcgttagtgctttgccctacc
cgtgagctatgtttacaaatcgcaaaagacattgaaaaatttgctaagttcatcgataac
gttaacgttgttgcggtgtatggtggtgcaaatatttcagatcaattgcgtcaaatccgt
cgtggtgtacagattgttgttgctacaccgggacgtatgcttgacatcatcggcagaaat
gccattgacttctccaatgtaaaatacgttgtattggatgaggctgatgagatgttgaac
atgggtttccaagaagatatcaacaatatcctttcggaaacaccagacactaagaaaaca
tggttattttcagcaaccatgcctagagaggttcgtcgtatagcacaaaactatatgtct
aacccattcgagttaaccgtaggtacaaaaaatacgggtaacgcaaacattgagcaccat
tattatttaatcaaggctaaagataaatatgcggcgttcaaacgtattgtagatttctat
ccagaaatcttcggtatcgtgttctgtcgtacaaagatcgaaacacaagaaattgctgaa
gcgcttgttagagatggttataatgcagattcactgcatggtgacctttcacaacaacaa
cgtgataaagtaatgaaacgttaccgtgaccgtagtttacagttgcttatcgcaacggat
gtagctgcacgtggtatcgacgttaatgacgtaactcacgttattaacttctctttaccg
gatgaagtagagaactatacgcaccgttcaggacgtacagctcgtgcgggtaaaacaggt
atctctttatcgttagtaaacgttaaagaattgagtaaaatccgtcacatcgaaaaaatt
atcggtaaatcttttgagaaaaaagaagttcctcaaggtacagaagtatgtgaaaaacaa
cttttcgcccttgtagacaaagtacacaatgtagatatcaacgaagagcaaattgcacca
ttcttaccaaagattatggaaagtatggaagatttgtctaaagaagatatcatcaaacgc
tttgcttcattggaattcaaccgtttcttggaatattaccaaaatgcgcctgacttaaat
atcgaagcccgtgaaggtgccggtagagaaagaggtgatcgcgatgaccgcagaagtcgc
caaggatctaaaggttatacccgtttgttcatgaacttaggttctgtcgatgaatttagc
cgtggagatatgcttggtttcatctgtaacacagcaaagatctctggcaaatcaattggt
aagatcgaccttaaaggtgttttcacgttctttgaagtggaagatgcagaagttaaccgt
gtatttgatggctttaaagacatcgatttcaacggtcgtcaagtacgtatcgaagtatct
ggagaaggaggtggccgttccgaaggtggacgtggcggtagacctcgtggtggagaccgt
ggcccacgtagtggtggcggtgaccgcagagatcgcaaccgtggagaacgttcaggtggt
ggtagtcgtggaggcgaacgtcgcgaaggcggcttcagagacttctctggcaaacgccaa
ggatctagatctaaatattag
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