Sphingobacterium psychroaquaticum: E2P86_03875
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Entry
E2P86_03875 CDS
T05967
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
spsc
Sphingobacterium psychroaquaticum
Pathway
spsc03030
DNA replication
spsc03430
Mismatch repair
spsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E2P86_03875 (holA)
03430 Mismatch repair
E2P86_03875 (holA)
03440 Homologous recombination
E2P86_03875 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsc03032
]
E2P86_03875 (holA)
03400 DNA repair and recombination proteins [BR:
spsc03400
]
E2P86_03875 (holA)
Enzymes [BR:
spsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E2P86_03875 (holA)
DNA replication proteins [BR:
spsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E2P86_03875 (holA)
DNA repair and recombination proteins [BR:
spsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E2P86_03875 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
TP_0481_C
DNA_pol3_delta2
DisA-linker
HP_1247_M
Motif
Other DBs
NCBI-ProteinID:
QBQ40332
LinkDB
All DBs
Position
909489..910499
Genome browser
AA seq
336 aa
AA seq
DB search
MQVNAIISDIKKRKFSPIYLLHGEESYYIDLVSDQLEHTVLTDAQKGFDQTVLYGKDTTL
VNVVNAAKRYPMMSDYQVIVIKEAQDLKWKTEEELLLKYVEHLTPTTILVLAYKYGKFDK
RKKLYKAIEKVGTVVESAKLYENKVGEWVLDQFRDLGRTIHPQAAAMMADYLGTDLSKIA
NEIEKLVLNVSKEQEIQTTHVAQNIGVSKDFNVFELQSALAKRNATKAIQIVDYFAANPK
SNPLPLVLGNLGTYFTKVLKYHYLPDKSPQGASKELGVHSFFVKEYELAARNFNRRKTFD
IIRFLSEYDLKSKGYLVGPFTDNGDLLRELIFKILN
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcaacgcgataatttccgacatcaaaaaaagaaagtttagcccgatctatctt
ctacatggagaggagtcttattatattgatttggtaagcgatcagttggagcatacggtg
ctcacagatgcccagaagggttttgaccaaaccgtgctttacggaaaagataccacgctc
gtaaatgtggtaaatgctgctaagcgttaccctatgatgagcgactaccaagtcatcgtg
atcaaagaagcgcaagatctaaagtggaagacggaagaggaacttttgctcaaatacgtg
gagcatttaacaccgacgaccatcttggtattagcgtataaatacggcaagtttgataaa
cgtaagaagctgtacaaagcaattgagaaggttggtactgtggtggagtcggccaagttg
tatgagaataaggtgggcgagtgggtgctagatcagtttcgtgatttaggacgaacgata
cacccgcaggccgcggcgatgatggctgattatttagggacagacctttcgaaaattgcg
aatgagattgaaaagttagtgctcaatgtgagtaaagaacaagagatccagaccacacat
gtggcgcaaaatataggtgtcagtaaagatttcaatgtttttgaattgcagtcggcttta
gctaaacgcaatgcgacgaaggccatccagattgtcgattattttgctgcgaacccgaag
tctaatccgctaccgcttgtgctggggaatttaggcacctactttacgaaagtattaaag
tatcactatctgcctgataaatctccacaaggggcttccaaggagctgggggttcattct
ttttttgtgaaggagtacgagttggcggcccggaatttcaatcgccgtaaaacatttgat
attatccgatttctgagtgagtatgatctaaaatctaaaggttacctcgttgggccgttt
acagataacggagacctcttacgggaactaatatttaaaattttgaattaa
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