Sphingobacterium psychroaquaticum: E2P86_04030
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Entry
E2P86_04030 CDS
T05967
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spsc
Sphingobacterium psychroaquaticum
Pathway
spsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2P86_04030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsc03019
]
E2P86_04030
03400 DNA repair and recombination proteins [BR:
spsc03400
]
E2P86_04030
Enzymes [BR:
spsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E2P86_04030
Messenger RNA biogenesis [BR:
spsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E2P86_04030
DNA repair and recombination proteins [BR:
spsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E2P86_04030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QBQ40363
LinkDB
All DBs
Position
950040..951944
Genome browser
AA seq
634 aa
AA seq
DB search
MEHNSQSILKQYWGYDTFRPLQEDIVHAILQGRDTLALMPTGGGKSICFQVPALMSEGIC
IVISPLIALMKDQVENLRKRGIEAVAIFSGMSKREVDITLDNCVYGKIKFLYLAPERLYS
DLVRERIRYMKVNLFAIDEAHCISQWGYDFRPPYLQLAQLRELHRNVPFLALTATATPQV
VDDIQEKLAFTTPNVFRMSFGRSNLAYMALQEDDKMNRMLRMIHKLGGSGVVYVRNRRET
QEVAQYLVNHGIPADFYHAGLDNISRSQKQDRWMQQQVRVIVATNAFGMGIDKGDVRFVL
HLDIPDSLEAYYQEAGRAGRDGKKAYPVLMYQQQDRERLWDNFESSFPSIKFIQQVYHHL
CNFLQIAYGAGKGISFDFDIEAFTKRYQLEIMPTISALKFLERDGWLAVSEAVYIPSRLK
FEVDYQEVYKLQVQSAKYDPLIKLILRNYGGAFDFFIPINEYEFAKKLKLPYLEIVNMLQ
GLQKLEILSYLPKTDAPQVELLQPRVDYKNLFIDSQFIQERKKIKQQQLEAIDNYLDTEH
CRSVALQGYFGEKDVPPCGTCDLCLMRIHAEGMTEKIETEIRTLLTDKKMDVKSLIDAIE
TGNDEARLRVVRSLVDSEFVQVEEGMYSWNVSKY
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggagcacaacagtcagtctatattgaagcaatattggggatacgatacctttcgtccg
ttacaagaggatatcgtacacgctattcttcagggacgtgataccttggctttgatgcca
acgggaggaggtaaatctatttgtttccaagtgcctgcattaatgtcggagggcatctgt
atcgttatcagtccgctgatcgcgctcatgaaagatcaggttgaaaatttacgtaaacgt
ggtattgaggcagttgctattttttcggggatgtcaaagcgtgaggttgatatcacactc
gacaattgtgtttacggaaagatcaagtttttgtacttagcgccagagcggttgtacagc
gacctggtgcgtgaacgtattcgttatatgaaggtgaacctcttcgcgattgatgaggcc
cattgtatttcacagtgggggtatgattttagaccgccttatctgcaactggcgcaactc
cgggaattacatcgcaacgttccttttcttgctttaacagcaacggctacaccacaagtg
gtagacgatattcaagaaaaactggcttttacgacacccaatgtttttcggatgagcttt
ggtcgttccaatttggcctacatggcactccaggaggacgataagatgaaccgaatgctg
cggatgatccacaagctcggtggaagtggggtggtgtatgtgcgcaataggcgagaaaca
caagaagtggcacagtacttagtgaaccacggtattccagcagatttttatcatgctgga
ctagataatatatcgcgttcgcaaaagcaagaccgatggatgcagcaacaggttcgtgtt
attgttgcgacgaatgcttttggaatggggattgataaaggggatgtgcgttttgtgctg
catcttgatattccagattccctagaagcatactatcaggaagcggggcgtgcggggcgc
gatggaaagaaagcttatccggtcctgatgtatcaacagcaagaccgtgagcgattatgg
gataactttgaatcaagtttcccttcgataaagtttatacaacaggtgtatcatcacctt
tgtaattttttgcagatcgcatatggggctggaaaaggaatctcatttgattttgatatc
gaagcttttacgaaacgttatcagttggagatcatgcctacgatcagtgccttaaagttt
ttggagcgtgacgggtggctagctgtttcggaggctgtatacattccatcgagattgaag
tttgaagtggattaccaggaagtttataaactacaggtacagtccgctaaatatgatccg
ttgattaagcttatcctccgtaattatggtggtgcatttgatttttttattccgatcaat
gaatatgaatttgcgaagaaactgaaacttccatatctcgaaattgtgaacatgttgcaa
ggtttgcagaaattggagatactctcttatctgcctaaaactgatgcaccacaagttgaa
ttgttgcagccgcgtgtggattataaaaatttgtttattgacagccaatttattcaagaa
aggaagaaaataaaacagcaacagctggaggccatcgataattacctcgatacggagcat
tgtcgtagtgtagcgttacaaggttattttggagaaaaggatgtccctccttgtggaaca
tgcgatttgtgtttaatgcgtatccatgcggaaggaatgaccgaaaaaattgaaacggag
attcgaacgctattaactgataagaaaatggacgtaaagagtttgatcgatgccatagag
accgggaatgacgaagcgcgtttacgcgtagtaagaagtttagtggacagtgaatttgta
caggtagaagaggggatgtatagttggaatgtgtcgaaatattaa
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integrated database retrieval system
