Sphingobacterium psychroaquaticum: E2P86_17425
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Entry
E2P86_17425 CDS
T05967
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
spsc
Sphingobacterium psychroaquaticum
Pathway
spsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E2P86_17425 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsc03400
]
E2P86_17425 (uvrA)
DNA repair and recombination proteins [BR:
spsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E2P86_17425 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E2P86_17425 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
UvrA_DNA-bind
AAA_21
nSTAND1
AAA_16
AAA_29
nSTAND3
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_22
ATPase
AAA_23
NACHT
cobW
SLFN-g3_helicase
Viral_helicase1
DUF3987
Motif
Other DBs
NCBI-ProteinID:
QBQ42825
LinkDB
All DBs
Position
4236531..4239344
Genome browser
AA seq
937 aa
AA seq
DB search
MSKKSTENSKSYIQIKGARVNNLKNIDVDIPKNKLVVITGMSGSGKSSLAFDTLYAEGQR
RYVESLSSYARQFMGRMNKPEVDYIKGIAPAIAIEQKVITSNPRSTVGTSTEIYDYLKLL
FARIGKTISPISGREVTKDSVSSIVGEMMTLPNDTTATIFAPLHPYNDRKLKEELSLQLQ
KGFVRIKYMDSIQKIENIIEDKGIKNNTFQPGDIQIVVDRIVLDSEEETYSRLADSLQTA
LFEGKGECFVETNGELRHYSDKFELDGLTFEEPSPNFFSFNNPYGACKKCEGYGKVIGID
PDLVIPDKSKSVYDGAIAPWRGEKMGEWLDKLTRTAIKFDFPVHRAYGDLTAAQQELLWT
GNKYFTGLNQFFEELEQQTYKIQYRVMLSRYRGKTDCPECKGSRLRKDATYVKIREKSIT
DIVLLPLDEALTFFTSLDLDKNEKIIAKRLLAEIENRLQFLCDVGLSYLTLNRLSNTLSG
GESQRINLATSLGSSLVGSIYVLDEPSIGLHPRDTQRLIGVLKSLRDVGNTVVVVEHEQE
MMEAADYIIDIGPEAGIHGGQLVFAGNYNEIIQSKTSLTGQYLSGAKSIPTPASRRRWTE
SITVKGARENNLQGTDASFPLNVFTVVTGVSGSGKTSLVKRILYPALQKAIGNYSGEQTG
LFDGIEGAIDHIQQIEMIDQNPIGRSSRSNPVTYVKGWDEIRAVYAALPAAKAGGLKPAA
FSFNVEGGRCDVCQGDGEVKIEMQFMADIVLPCEACGGKRFKQHVLDVTYKEKSVSDILE
LSVDEAIVFFADQPKILGKIQPLQDVGLGYVKLGQPSSTLSGGEAQRIKLASFLIKGNNS
KRTLFIFDEPTTGLHFHDIQKLIKAFDALIALGNSILVIEHNMEMIKTADWVIDIGPEGG
NHGGKLVFAGTPEDLTLCNESYTGKFLKNHLHLSAHS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaagtcaacagaaaactccaaatcatacatccaaatcaaaggtgcacgtgtc
aacaacctgaaaaacattgatgttgatattccaaagaacaagcttgtcgtaatcacggga
atgtccggttcaggaaaatcatcgttagcttttgacaccctttatgccgaagggcagagg
cgatatgtagaaagcttatcttcttatgcgcgccagtttatgggacggatgaacaagcct
gaagtagactatatcaaaggtattgctccggccattgccatcgagcaaaaagtaatcaca
tcgaatccccgctctacagtcggtacatcaacagagatctatgattatctaaagctgctt
tttgcgcggatcggcaaaacaatctccccgatatcgggccgcgaagtaacgaaggactcg
gtgtcctccattgttggggagatgatgacgctaccgaacgatacgacagcaacgatcttc
gcgccattgcatccctataatgaccgaaaactgaaggaagagctttccctccagttgcag
aaaggtttcgtgcggatcaagtatatggatagcatccaaaagatcgaaaacattattgag
gacaaaggcatcaaaaacaacaccttccaaccgggcgacatacaaattgtggtcgaccgt
atcgtgttggatagcgaagaggagacatacagccgtttagcagactcgctgcaaaccgca
cttttcgaaggaaaaggagagtgttttgtcgagacaaatggtgaattgagacactattca
gataagtttgaattagacggcttaacttttgaagaaccatcccctaattttttcagcttt
aacaacccgtatggcgcttgtaaaaagtgtgaaggttatggtaaggttattggtatcgat
ccggaccttgttattcctgataagagtaaatctgtgtacgatggtgctattgccccatgg
cgcggagagaagatgggcgaatggttggataaattaacacggacggcgataaaattcgac
tttccggttcaccgtgcttatggtgacctgaccgcagcacaacaagaactgctttggaca
ggtaataaatatttcacggggctgaaccagttttttgaagagctagaacagcaaacctat
aaaatacagtaccgtgtgatgctatccagatatcgcggtaagacagattgtcccgagtgt
aagggctcacgcctacgaaaagatgcgacttacgtcaagataagagaaaaatcaatcacc
gatattgtattgcttccgctcgatgaagcacttacctttttcacaagtcttgacctcgac
aaaaacgaaaagattattgcaaaacgtttgttggcagagattgagaacagattgcaattc
ttatgtgatgttggtttaagctatctgacattaaaccggttaagcaataccctttctggc
ggagagtcgcaacgtattaatctagccacatcgctgggaagctccttggtaggctctatc
tatgtgcttgacgaaccaagcattggtcttcacccgcgcgacacacaacgcttaatcggt
gtattgaaatcactacgagatgttggtaataccgtcgttgtggttgagcatgagcaagaa
atgatggaggctgccgactatatcatcgatattggccccgaggctggtattcatggtggt
cagctggtatttgcgggtaactataacgaaataatacaaagcaaaacaagtttaaccgga
caatacttgagtggtgcgaaaagcattcccactccggcgagccgtcgtcgttggacagag
agcattaccgtgaaaggtgcccgcgaaaacaatctccaaggtactgacgcttcttttcct
ttaaatgtctttaccgttgtaacaggtgtttcgggttcgggtaaaacatcactcgttaaa
cgcattctctatcctgcactacaaaaggctataggaaactattcgggcgaacaaacgggt
ttatttgatggaattgagggcgctattgatcatatccaacaaattgagatgatcgatcag
aatccaattggacgctcttcgcggtctaatcctgtaacatatgtcaagggatgggatgag
atccgagcggtctatgccgcacttcctgcggctaaagctggtggactcaaacctgctgct
ttctcttttaatgtggaaggtggacgctgcgatgtttgccagggtgatggagaagtgaaa
atagaaatgcagtttatggccgatattgtactcccttgtgaggcttgtggcggaaaacgc
tttaaacagcatgtgcttgatgttacatacaaggagaaatctgtatccgatattttagag
ctaagtgttgatgaagccattgttttctttgccgatcaaccgaaaatattaggaaagatt
caaccgctccaagatgtaggcctgggttacgtaaagctagggcaaccgtctagcacgctc
tccggcggtgaagcgcaacgtattaaattggcctctttcttaattaaaggaaacaacagc
aaacgaaccttatttatcttcgacgaaccgacaacgggactgcactttcatgatattcaa
aagctgatcaaagctttcgacgccttaattgcattagggaatagtattcttgttattgag
cataatatggaaatgataaaaacggctgactgggtgatcgatatcggtccggaaggtgga
aaccatggtggcaagctggtatttgccggaacaccagaggatcttaccctctgtaacgaa
tcttatacagggaagtttttaaaaaatcacctacatttatcagctcattcttaa
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