Staphylococcus shinii: JMB28_03675
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Entry
JMB28_03675 CDS
T08256
Symbol
fdhF
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
spsd
Staphylococcus shinii
Pathway
spsd00630
Glyoxylate and dicarboxylate metabolism
spsd00680
Methane metabolism
spsd01100
Metabolic pathways
spsd01120
Microbial metabolism in diverse environments
spsd01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
spsd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
JMB28_03675 (fdhF)
09102 Energy metabolism
00680 Methane metabolism
JMB28_03675 (fdhF)
Enzymes [BR:
spsd01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
JMB28_03675 (fdhF)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molybdop_Fe4S4
Molydop_binding
Fer4
Fer2_4
Fer4_7
NADH-G_4Fe-4S_3
Fer4_6
Fer4_10
Fer4_21
Fer4_2
Fer4_8
Fer4_9
Fer4_15
Fer4_17
Fer4_13
Fer4_22
Fer2_3
Fer4_4
Motif
Other DBs
NCBI-ProteinID:
QRA17332
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All DBs
Position
822782..825736
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AA seq
984 aa
AA seq
DB search
MQEHLIVSLDGKDYLVEPGTNLLQFIKSQDTFVPSICYNESLGPIQTCDTCTVEIDGKMQ
RACGTTIDRPMIVNTQNDKVQTSQKEALDRILEKHMLYCTVCDYNNGDCEIHNTMDQWGL
EHQTYEYKEKPYEKDYGPFYRYDPDQCILCGRCVEVCQDVQVNETLTIDWERQQPRVIWD
NDTTINDSSCVGCGQCATVCPCNAMLEVNMEGNAGYMTDLEPGSLAAMIDLTKKAEPGYG
PLFAVSDSEAAMREERIEKTKTVCTYCGVGCSFDVWTKDREVLKVQPQHESPANKISSCV
KGKFGWDYVDSDERLTKPLVRKNGQFEEVEWEEALKVVANNFNKVKASHGADGLAFISSS
KATNEESYLMQKLARQVIGTNNVDNCSRYCQAPATKGLFRTVGHGGDSGSIDDLEIADMV
VLIGTNTAEAHPVIASRIKRGHKLYNNTLNVFDIRKHEMAERADNFYQPKPGTDLVWLSA
VTKYIIDNELHDKSFIDEWVNHFEDYYKSLAPYTMEFAEETTGIAKEDLIDFAQQLADAK
TVSIAWAMGVTQQDIGSDTSTAISNLLLATGNYRKPGTGAYPLRGHNNVQGCSDMGSMPD
QFPGYQKVVDDEIRAKFEREYGQSLPSVPGKDNHQMMEGIHEGEIDSLYLYGEDTGIVDS
NINYVQAALEKVGFLVVQDEFFTFTATYADVVLPASPSLEKTGTFTNTERRIQRLYQALD
TKGDSKPDWEIIQAVAKSLGYDWGYTHPSEIMDEIARVTPLYSGVNYDRLEGYNSLQWPV
AEDGKDEPTLYLNGFNFEDGKANFYPLTFDNFFKVNEEYDLHVNNGRLLEHFHEGNMTYK
VPGLEYKMPHAFVEISPELAKERDIHEGAEIKLISESGEAELIAHVTDRVKGKEIYIPLN
NNAMVHGDKGAINLLTNSDVDKDTDTPSYKRTSCRMEVKTRRGKSPLNPTNFRVNKQRQP
QYSVRVQDKWKREDYTFPGSQVDK
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaacatttaattgtctctttagacggtaaagactatcttgtagaacccggaaca
aatttactacagtttattaaatctcaagatacttttgttccgtcgatatgctataacgaa
tcgttaggtcctatacaaacatgtgatacatgtactgtggaaatcgatgggaaaatgcaa
cgagcatgtggcacgacgatagatagaccaatgattgttaatacgcaaaatgataaagta
caaacgagtcaaaaagaagcgctagatagaattttagaaaagcatatgctctattgtact
gtgtgtgattataacaatggtgattgtgaaattcacaatacaatggaccaatggggctta
gaacaccaaacttatgaatataaagaaaaaccctatgaaaaagattatggtccgttttat
cgttatgatccagatcaatgtattttatgtggccgttgtgtggaagtatgtcaagacgtt
caagtaaacgaaacacttacaattgattgggaacgccaacagccacgagtaatctgggat
aatgatacaacgataaatgattcatcatgtgtaggatgtggacaatgtgcaacagtatgt
ccgtgtaatgcaatgctagaagtgaacatggaaggtaacgcaggttatatgacagattta
gagccaggttcacttgcagcgatgattgatttaactaagaaggcagagcctggttatggt
ccgttgtttgcagtttcagattcagaagcggctatgcgtgaagagcgtatcgaaaaaact
aagacagtatgtacatactgtggcgtaggttgttctttcgatgtttggacaaaagataga
gaagtgttaaaagttcaaccacaacacgaatcaccagcgaataaaatttcttcttgtgtt
aaaggtaaatttggttgggattatgttgattcagatgaacgtttaacaaaacctttagta
cgtaaaaatgggcagtttgaagaagttgaatgggaagaggctttaaaagttgttgcgaac
aactttaacaaagtgaaagcatcgcacggcgctgacggtttagcatttatttcttcttca
aaagctacaaatgaagaatcttatctcatgcaaaaactcgctagacaagttattggtaca
aataacgtagataactgttcacgttactgccaagctccagcaactaaaggattatttaga
actgtaggtcatggtggtgactcaggttctatagatgatcttgagatagcagatatggtt
gtattgataggtacaaacacagcagaagcacacccagtaattgcatctcgtattaagcga
ggtcataaattatataacaatactttaaatgtctttgatattcgtaaacatgaaatggct
gaacgtgccgataatttctatcaaccaaaaccaggtacagatttagtttggttatctgct
gtgacaaaatatatcattgataacgaattgcatgataagtcatttattgatgaatgggtt
aaccattttgaagattattataaatcattagcgccttatacaatggaatttgcagaagaa
actacaggtattgctaaagaagatttaattgatttcgcgcaacaattagccgatgccaag
acagtatctattgcgtgggcgatgggtgttacacaacaagatataggtagtgatacatcc
actgcaatttctaatttattattagcaacaggtaactatagaaaaccaggtacaggtgct
tatcctctacgtggacataacaatgttcaaggatgtagtgacatgggcagtatgcctgat
caattcccaggctatcaaaaggttgtagacgatgaaattcgcgctaaatttgaaagggaa
tatggtcaatctttaccaagtgtccctggtaaagataatcatcaaatgatggaaggcata
catgaaggtgaaatcgattccctatatttatatggtgaagatactggtattgtagattca
aatatcaactatgtacaagcagcattagaaaaagtcggtttcttagtagtacaagatgaa
ttctttacatttacagcaacatatgcagatgttgtattaccagcaagtccttcacttgaa
aaaactggaacatttacaaatacagaacgtcgtatccaacgtttgtaccaagctttagat
actaaaggcgattctaaacctgattgggaaattatccaagcagtagcaaaatcattaggc
tatgactggggttacacacatccaagtgaaatcatggatgaaattgctagagtaacacca
ctttattcaggcgtgaattatgacagacttgaaggttataatagtttacaatggccagtt
gctgaagatggtaaagatgaaccaacattatatcttaatgggtttaattttgaagatgga
aaggctaatttctatccattgacatttgataatttctttaaagtaaatgaagagtatgat
ttacatgttaataacggacgtttattagaacatttccatgaaggtaatatgacttataaa
gttccaggtttggaatataaaatgccacatgcctttgtagaaatatctcctgaacttgct
aaagaaagagatattcatgaaggggcagaaattaaattgatttctgaatctggtgaagca
gaattaattgcgcacgtaacagacagagtaaaaggcaaagaaatttatattcctttgaat
aataacgcaatggttcatggtgataaaggtgcaatcaacttattgaccaatagtgatgtt
gataaagacacagatacgccgtcatacaaacgcacaagttgtcgtatggaagttaaaaca
cgtagaggtaaatcaccattaaatcctacaaacttccgtgtcaataaacaacgtcaacca
cagtatagtgttcgagttcaagacaaatggaaacgtgaagattatacattcccaggaagt
caggtggataaataa
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