Staphylococcus shinii: JMB28_04725
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Entry
JMB28_04725 CDS
T08256
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spsd
Staphylococcus shinii
Pathway
spsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JMB28_04725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsd03019
]
JMB28_04725
03009 Ribosome biogenesis [BR:
spsd03009
]
JMB28_04725
Enzymes [BR:
spsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JMB28_04725
Messenger RNA biogenesis [BR:
spsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JMB28_04725
Ribosome biogenesis [BR:
spsd03009
]
Prokaryotic type
rRNA helicases
JMB28_04725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_19
AAA_30
CMS1
Flavi_DEAD
Cas3-like_C_2
HyfI_C
Motif
Other DBs
NCBI-ProteinID:
QRA17522
LinkDB
All DBs
Position
1014403..1015926
Genome browser
AA seq
507 aa
AA seq
DB search
MQNFKELGISDKMAETLQSMGFDEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPL
IEKVADQEGVQSLILAPTRELAMQVAESLKSFAKGQNVQVVTVFGGMPIDRQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTTDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTML
FSATMPKAIQTLVQQFMKSPVIVKTMNNETSDPQIEEFYTIVKELEKFDTFTSFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQIEQANK
RQMTALRPPHRKEVLKARENDIKGKVQNWMSRDSEPRLQRIATELIEEYNDVNLVAALLQ
ELVESNDDVDVQLTFEKPLSRGKGRQGKGGPKRGGGNHKRGGGKFDNKNRRSSKGGFNNK
KKNDRPSSDRNNNKKSMKGRTFADHKK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaattagggatctcagataagatggcagaaaccctacaatccatg
gggttcgatgaggccactcctatacaaaaagagagtatccctcttgccttagaaggcaaa
gatgttcttggtcaagcgcagactggtacaggtaaaacaggcgcatttggtattccatta
attgaaaaagtggcagaccaagaaggcgttcaatcattaatccttgcaccaacgagagaa
ttagcgatgcaagttgcagaatcactaaaatcgtttgctaaaggacaaaatgtacaagta
gttacagtatttggtggcatgccaatcgaccgccaaatcaaagcgcttaaaaaaggacca
caaatcgtagtaggtacgccaggtcgtgtgatagatcacttaaatcgtcgcacattaaaa
acaactgatattcatacgttaattttagatgaagcggatgaaatgatgaacatgggcttc
atcgatgacatgaaatttattatggataaaatacctgcagaacaacgtcaaactatgttg
ttctcagctactatgcctaaagcaattcaaacattagtacaacaattcatgaaatcacct
gttattgttaaaacaatgaacaatgaaacatctgatccacaaattgaagaattttatact
attgtaaaagaattagaaaaattcgatacatttacaagtttcttagatgtacatcaacca
gaactagctattgtattcggtcgtacaaaacgtcgtgttgatgaattaacaagcgcgtta
atttcaaaaggatacaaagctgaaggattacatggtgatatcacacaagcaaaacgttta
gaagtattgaaaaaattcaaaaatgaccagttagacattttagtagcaacagatgttgca
gcaagaggcttagacatttcaggtgtaagccatgtttataacttcgatattcctcaagat
actgaaagttatacacacagaattggacgtactggtcgtgctggtaaaaagggtgttgcg
attacattcgttaacccaattgaaatggattatatccgtcaaattgaacaagcaaacaaa
cgtcaaatgacagctttgagaccacctcatcgcaaagaagtgcttaaagcacgtgaaaac
gacattaaaggtaaagttcaaaattggatgtctagagacagcgagcctagattacaacgt
attgctactgagttaatcgaagaatataatgatgtgaatttagttgcagcattattgcaa
gagttggttgaatcaaatgatgatgttgatgttcaattaacatttgaaaaaccgttatct
cgcggcaaaggtcgtcaaggtaaaggtggaccaaaacgtggtggtggcaatcacaaacgt
ggcggtggcaaatttgataacaaaaaccgtcgttcaagtaaaggcggattcaacaataag
aaaaaaaatgacagaccttcttcagacagaaacaacaataagaaatcaatgaaaggtcgc
acatttgccgaccataaaaaatag
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