Staphylococcus shinii: JMB28_05145
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Entry
JMB28_05145 CDS
T08256
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spsd
Staphylococcus shinii
Pathway
spsd03420
Nucleotide excision repair
spsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JMB28_05145 (pcrA)
03430 Mismatch repair
JMB28_05145 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsd03400
]
JMB28_05145 (pcrA)
Enzymes [BR:
spsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JMB28_05145 (pcrA)
DNA repair and recombination proteins [BR:
spsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JMB28_05145 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
JMB28_05145 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
ResIII
GBS_Bsp-like
DEAD
Motif
Other DBs
NCBI-ProteinID:
QRA17597
LinkDB
All DBs
Position
1098976..1101186
Genome browser
AA seq
736 aa
AA seq
DB search
MNALVNKMNDEQSQAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKGVSPYNVLAITF
TNKAAKEMKERVQTLVGEQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSV
IKDVLKNENIDSKKFEPRMFIGAISNLKNELKTPEDAQKEANDYHSQMVATVYKGYQRQL
SRNEALDFDDLIMVTIRLFERVPEVLDYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFK
NLCVVGDSDQSIYGWRGADIQNILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKNNS
ERKPKGLWTGNTDGDKIHYYEATTERDEAEYVVREIMKHQRNGKKYQDMAILYRTNAQSR
VLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLRRVINIPKRGIGPS
SVDKIQAYAVQNDLSMFDALAEVDFIGLSKKVTQECITFYDTMQNIIKQQEFLEITEIVN
EALEKSGYREMLEREQTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVAD
IDEAQIENGITLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSDDEHEMQEERRICYVA
ITRAEETLYLTHATSRMLFGRPQSNMASRFLREIPEDLLENESKRNASTQSQGNRFQSAT
KQPAKRAHSQKTTTSRKSQATTNWNVGDKVMHKSWGEGMVSNVKEKNGSVELDIIFKSEG
PKRLLAQFAPIEKKGE
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcattagttaataaaatgaatgacgaacaaagccaggcagtacgtacaacagag
ggtccattacttataatggcaggcgcgggttcaggtaagacacgtgtcttaacacatcgt
attgcttacttgttagatgaaaagggagtgtctccgtataatgttttagcgattactttt
acaaataaagcagctaaggaaatgaaagaacgtgtccaaactttagttggtgaacaagct
gaagtgatttggatgtcaacattccactccatgtgtgtgagaattcttagaagagacgca
gatcgtattggtattgaaagaaactttacgattattgatccaactgatcaaaaatcagtt
attaaagatgttttaaaaaatgaaaatatagatagtaagaaatttgaacctagaatgttt
ataggcgcaattagtaatttgaaaaatgaattaaagacacctgaagatgcgcaaaaagaa
gcaaatgactaccattcacaaatggttgcgactgtatacaaaggttatcaacgtcaactt
tcaagaaatgaagcgctagactttgatgatttaattatggtgaccatccgattatttgaa
cgtgttccagaagtgttggattactatcaaaataaattccaatacatacacgtggatgaa
tatcaagatacgaataaagcacagtacacattagtgaaattattagcatcaaaattcaaa
aatttatgtgtagtaggagattctgaccaatcgatttacgggtggcgcggggcagatatc
caaaacattttgtcatttgaagaagattatcctgaggcaaaaacaattttcttagaacaa
aattatcgttctactaaaaatatattaaatgcagctaatgaagttattaaaaataattca
gaacgtaaacctaagggattatggacaggcaatacagatggcgataaaattcattactac
gaagcgacaactgaacgcgatgaagcagaatatgttgtacgtgaaatcatgaaacatcaa
cgaaatggcaagaaatatcaagatatggcaattctataccgtaccaatgcacagtcacgt
gtactggaagaaacctttatgaaatctaatatcccttatactatggttggaggacaaaag
ttctacgacagaaaagaaattaaagacttattgagttacttaagaattattgcaaacagt
aatgacgatattagcttacgccgtgttattaatattccaaaacgtggcattggcccgtct
tcggtagataaaattcaagcttatgctgttcaaaatgatttgagtatgtttgatgctttg
gcagaagttgattttattggtttatcgaaaaaagtaacacaagaatgtattactttttat
gatacgatgcaaaatatcatcaaacagcaagagtttttagaaattacagagattgtaaat
gaagcgttagaaaaatctggttatcgcgaaatgttagagcgtgaacaaacattagaatcg
agaagtagattagaaaatattgatgagttcatgtctgtaccaaaagattatgaagaaaat
acgccgttagaagaacaatctttgataaacttcctaactgatttatcattagttgctgat
atagatgaagcacaaattgaaaatggtataacattgatgacaatgcactctgctaaaggt
ttagaattcccgattgtttttataatgggtatggaagagtcgttattcccgcatattaga
gcaattaaaagtgatgacgaacatgaaatgcaagaagaaagacgtatctgctatgtggct
attacacgtgcagaagaaacattatatttaacacacgcaacatcaagaatgttgtttggt
agaccacagtctaatatggcatctaggttcttaagagaaatccctgaagatttactagaa
aatgaatctaaacgcaacgcttctacgcaaagtcaaggaaatcgtttccaatcagctaca
aagcaaccagctaaaagagcacatagccaaaaaactactacatcaagaaaatctcaagca
acaactaattggaatgttggagataaagtgatgcataaatcttggggtgagggtatggtt
agtaatgtgaaggaaaaaaatggttcagtagaattagatattatctttaaatcagaaggg
ccgaaacgattattagcacaattcgcaccaattgagaagaagggggagtaa
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