Pseudosulfitobacter pseudonitzschiae: SULPSESMR1_01303
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Entry
SULPSESMR1_01303 CDS
T04974
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spse
Pseudosulfitobacter pseudonitzschiae
Pathway
spse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SULPSESMR1_01303 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spse03019
]
SULPSESMR1_01303 (rhlE)
Enzymes [BR:
spse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SULPSESMR1_01303 (rhlE)
Messenger RNA biogenesis [BR:
spse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SULPSESMR1_01303 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Helicase_RecD
P-loop_SecA
HEM4
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
ASM72123
UniProt:
A0A221JZP8
LinkDB
All DBs
Position
1339339..1340655
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AA seq
438 aa
AA seq
DB search
MSDFDMMDLPEQLVKKLAEMGLKDPTPIQRQAIPHALNGRDVMGLAQTGTGKTAAFGVPL
VAQMLQMQGRPNPRTVRGLVLAPTRELANQIMENLKGFCEGTPLKAQMVVGGMSINPQIK
RLERGVDLLVATPGRLLDLMDRRAVDLRETTFLVLDEADQMLDMGFIHDLRKIASVLPKE
RQTMLFSATMPKLMNEIANSYLNSPIRIEVNPPGKAADKVTQEVHFIAKAEKSKFLMELL
DKHRDERALVFGRTKHGMEKLSRMLDKAGFAAGAIHGNKSQGQRDRAIAAFKSGEIKVLV
ATDVAARGLDIPDVKHVYNYELPNVPDSYVHRIGRTARAGKDGAAVAFCAPDEIDQLRDI
QKTMGVKIPIATGRAWESVDLPAKGGKSGGKPGGGRRRGGGGGRPGGGAPGGGTPASGGP
RRRRRGGGGGKPGGSQAA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatttcgatatgatggacctgcctgaacagctggtcaaaaagctggcggaaatg
ggtctgaaagacccgacgccgattcaaagacaagccatcccgcatgccctgaacgggcgc
gacgtgatgggtctggcccagaccggtacaggcaaaacggcggcctttggcgtgccgctg
gtggcgcagatgttgcaaatgcagggccgcccgaacccgcgcaccgtgcgcggtctggtg
ttggccccgacgcgcgagctggccaaccagatcatggaaaacctcaaaggtttctgtgaa
ggcacacccctcaaggcgcagatggttgtcggcggcatgtcgatcaacccgcaaatcaag
cgtctggaacgtggtgttgacctgctggtcgccactccgggccggttgctggacctgatg
gaccgccgcgcggtggatttgcgtgaaaccacgttccttgtgctggacgaagccgaccag
atgctggacatgggctttatccacgatctgcgcaaaatcgcgtcggtgctgcccaaggaa
cgccagacgatgctgttctcggccaccatgcccaagctgatgaacgaaatcgccaacagc
tatctcaacagcccgatccgcatcgaagtgaaccctccgggcaaagcggcggacaaggtg
acccaagaggtccactttatcgccaaggccgagaaatccaaattcctgatggaactgctg
gacaagcaccgcgacgaacgtgcgctggtttttggccgtaccaaacacggtatggaaaaa
ctcagccggatgctggacaaggcaggctttgccgcaggagccatccacggcaacaaaagt
cagggccagcgcgaccgcgccatcgccgcgttcaaatcgggcgagatcaaagtgctggtg
gccacagatgtggcggcccgtggtctggatattccggatgtgaaacacgtctataactat
gaactgcccaacgtgcccgacagctatgtgcaccgcatcggccggaccgcgcgcgcgggc
aaggacggcgctgcggtggcgttctgcgcccccgacgagattgaccaactgcgcgacatc
cagaaaacgatgggtgtgaaaatcccgatcgcaacgggccgcgcatgggaatcggtcgat
ctgcctgccaagggtggcaaatccggcgggaaacccggtggcggtcgtcgtcgcggcggc
ggcggtggtcgtcccggtggcggtgcccccggcggcggcacacctgcaagcggtggcccg
cgtcgccggcgtcgcggtggcggcggtggcaaaccgggtgggtcgcaagcggcctga
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