Pseudosulfitobacter pseudonitzschiae: SULPSESMR1_01616
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Entry
SULPSESMR1_01616 CDS
T04974
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spse
Pseudosulfitobacter pseudonitzschiae
Pathway
spse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SULPSESMR1_01616 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spse03400
]
SULPSESMR1_01616 (mfd)
Enzymes [BR:
spse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SULPSESMR1_01616 (mfd)
DNA repair and recombination proteins [BR:
spse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SULPSESMR1_01616 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
AAA_16
UB2H
Motif
Other DBs
NCBI-ProteinID:
ASM72429
UniProt:
A0A221K0C9
LinkDB
All DBs
Position
complement(1646486..1649956)
Genome browser
AA seq
1156 aa
AA seq
DB search
MTDPAHITVSGAPEGFDATRILAELARGVPVCHVARDDKRLVAMRDALRFFAPDVPVVIF
PAWDCLPYDRVSPNADISAQRMATLAALAHGMPDKFIVLTTLNAATQKLPARSVLREAAF
AARVGDRIDDAALRGFLVRMGFVQSPTVTEPGDYAVRGGIIDIYPPGDLGPVRLDLFGDV
LDGARRFDPATQRTTEKLDVVELAPVSEVILDDAAVTRFRQNYRLEFGAAGTDDPLYEAI
SAGRKHQGAEHWLAFFHDHLETLFDYLPDASITLDDQVTPTRLARWDTIADQYETRRLAM
VNRSKMDSVYKPAPPQGLYLDDAAWETAVAGRRVVQFRALAQSTGLGVVDAGGRIGRNFS
PERQQENISLFGALVAHIKAKLADGPVVVASYSAGARERLSGLIEDEGLAETIPVTDATR
IGKRGLHLVVWALEHGFEGPVDGKQLTVISEQDVLGDRLIRQPKRKRRADNFLTEATSLT
PGDLIVHVDHGIGRYHGMEVITAAGAAHECLLLEYAENSKLYLPVENIELLSKYGHDEGL
LDRLGGGAWQSKKAKLKERIREMADKLIRIAAERALRRAPVLEPPPGMWDAFSARFPYEE
TDDQLRAIGDVIGDLTSGAPMDRLVVGDVGFGKTEVAMRAAFVAAMAGVQVAVIAPTTLL
ARQHYKSFSERFRGFPLEVRTLSRFVSTKEASDTREAMSRGTADIVIGTHALLAKNTRFK
ELGLLVIDEEQHFGVGHKERLKQMRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPV
DRLAIRTYVSEFDTVTIREALLREHYRGGQSFYVVPRLSDLPEIEDFLKTQLPELSYVVA
HGQMAAGELDGRMNAFYDGKFDILLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRG
RVGRSKTRAYAYLTTKPRAKLTPVAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGE
EQSGQMRDVGFELYQSMLEEAIAKIKAGEMEGLSEADEQWAPQINLGVPVLIPEEYVPDL
DVRLGLYRRLSGLSTKVELEGFAAELIDRFGTLPREVNTLMLVVRIKAMCKRAGIAKLDG
GPKGAVIQFHNDKFASPEGLVTFIQDQRGLAKVKDNKIVVRRDWKSDADKIKGAFAIARD
LAEKVIAEKKKTKKKA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccctgcacatatcaccgtatccggcgcacccgaagggtttgacgccacacgt
attctggccgaactggcgcggggtgtcccggtgtgccatgtggcgcgcgatgacaaacgg
ctggtggcgatgcgtgatgcgctgcggttttttgcccctgatgtgcctgtggtgatcttt
cccgcatgggattgtctgccctatgaccgcgtgtcgcccaatgccgacatttcggcgcag
cggatggcaacgctggcggcactggcgcacgggatgccggataaattcatagtgctgacc
acattgaacgcggccacgcaaaagctgcctgcgcgctctgtgctgcgcgaggctgcgttt
gcggcgcgggtgggcgaccggatcgacgatgcggcgttgcgcgggtttcttgtgcgcatg
ggctttgtgcaatcgccgacagtgaccgagccgggcgattacgcggtgcgcggcggtatc
atcgacatctacccgccgggcgatctggggccggtgcggctggacctgtttggcgatgtg
ctggacggggcgcggcggtttgatccggcgacccaacgcactacggaaaagctggacgtg
gtcgaactggcgcctgtctccgaggtaattttggacgacgcggcggtgacgcggtttcgc
cagaattaccggttggaatttggcgcggcgggcaccgatgatccgctctacgaggcgatc
agcgcaggtcgcaaacatcagggcgcagaacattggctggcgtttttccacgaccatctg
gagacgctgttcgactatctgcccgatgcgtcgatcacgctggatgatcaggtgacaccg
acccgactggcgcgttgggacacaatcgccgaccaatacgagacgcgcaggctggcgatg
gtcaaccgctcgaagatggattcggtctataaacccgcaccaccgcaggggctgtatctg
gacgatgctgcgtgggaaaccgccgtggcgggtcgccgcgtggtgcagtttcgcgcgctg
gcacaatccaccggtctgggcgtggtggatgcgggcgggcgcatcgggcgcaatttctca
cccgagcgacaacaggaaaatatcagtcttttcggggctttggtggcccatattaaagca
aaactggcagatggccccgttgtcgtcgccagctattcggcaggcgcgcgtgaacggctg
agcggtctgatcgaggacgaggggctggccgagacaattcccgttactgacgcgacgcgc
atcggaaaacgtgggctgcatctggtggtttgggcgcttgagcacggctttgaggggccg
gtggacggcaaacagctgaccgtgatttccgaacaggacgtgctgggcgaccggctgatc
cgccagcccaagcgcaagcggcgcgccgacaacttcctgaccgaggccaccagcctgacg
ccgggcgatctgatcgtgcatgtcgatcacggcattggccgctatcacggcatggaggtg
atcaccgccgccggggccgcacatgaatgtttgctgctggaatatgcagagaattctaag
ttgtacctgccggtcgagaacatcgaactgctgtcgaaatacggccacgatgaggggctt
ctggaccggttgggtggcggcgcgtggcaatcgaaaaaggccaagctgaaagagcgcatt
cgcgagatggccgacaagctgatccgtatcgccgccgaacgcgccctgcgccgcgcgcct
gtgctggaaccgccgccgggcatgtgggacgcgttcagcgcgcggttcccctatgaggaa
accgacgaccaattgcgggccattggcgacgtgatcggggatctgaccagcggcgcgccg
atggaccgtctggtggtcggcgacgtgggctttggcaagaccgaggtggcgatgcgcgcg
gcctttgtggcggcgatggcgggcgtgcaagtggcagtgatcgcacccacgactttgctg
gcgcggcaacactacaagagcttttccgaacggttccgcggctttcccctcgaggtgcgc
acgctgagcaggtttgtcagcaccaaagaggcgtccgacacccgcgaggcgatgtcgcgc
ggcaccgccgacatcgtcatcggcacccatgcgctgttggcgaaaaacacccggttcaag
gaactgggcctgctggttatcgacgaagagcagcactttggcgtcggtcacaaggaacgg
ctgaagcagatgcgctcggatgtgcatgtgctgacgctgaccgccacgccaatcccgcgc
acgctgcaactgtcgctgacaggggtgcgcgatctgtcgatcatcggcacgccgcccgtc
gaccggttggcgatccgcacctatgtcagcgaatttgatacggtcacgatccgcgaggca
ctgctgcgcgagcattatcgcggtgggcagtcattctatgtggtgccgcgcctgtcggac
ctgcctgaaatcgaggatttcctgaaaacgcagttgcccgagttgtcttacgtggttgcc
cacggccagatggcggcgggcgagctggatggccggatgaatgccttttacgatggtaaa
ttcgacattctgctggccacgacgattgttgaatccggtctggatattcccaccgccaac
acgatggtggtgcatcgggccgatatgttcggtctggcgcaactctatcagattcgcgga
cgtgtcgggcggtcgaaaacccgtgcttatgcctatctgacgacgaaaccgcgtgcgaaa
ctgacgccggtggccgaaaaacgtctgcgtgttctgggctcgctcgatacgttgggcgca
ggctttacgctggccagtcaggatctggacattcgcggtgcgggcaatctgctgggcgag
gaacaatcgggccagatgcgcgatgtggggttcgaactgtaccagtcgatgctggaagag
gcgattgccaagataaaggcgggcgagatggaaggcctgagcgaggccgacgagcaatgg
gcgccgcagatcaatctgggtgttcctgtactgattcccgaggaatatgtaccggatctg
gacgtgcgtctggggctttaccgtcgtctcagtggtctgagcaccaaggtcgagctggaa
gggttcgccgccgagttgatcgaccgtttcggcaccctgccgcgcgaggtcaacacgctg
atgctggtcgtgcggatcaaggcgatgtgcaaacgcgcgggtatcgccaagctggacggc
gggccgaagggggctgtgatccagttccacaacgataagttcgcctcgcccgaggggctg
gtcaccttcattcaggaccagcgcgggctggccaaggtcaaggacaacaagatcgtggtg
cgccgcgactggaaatccgacgcggacaagatcaagggggcttttgccattgcccgtgat
ctggccgaaaaggtcatcgccgagaagaaaaagaccaagaaaaaagcctga
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