Pseudosulfitobacter pseudonitzschiae: SULPSESMR1_02531
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Entry
SULPSESMR1_02531 CDS
T04974
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spse
Pseudosulfitobacter pseudonitzschiae
Pathway
spse02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spse00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SULPSESMR1_02531 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spse03021
]
SULPSESMR1_02531 (rpoD)
Transcription machinery [BR:
spse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SULPSESMR1_02531 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
DUF7785
FTCD_C
Motif
Other DBs
NCBI-ProteinID:
ASM73328
UniProt:
A0A221K2V1
LinkDB
All DBs
Position
complement(2566655..2568640)
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AA seq
661 aa
AA seq
DB search
MAAKDTNDDTKTDDSDTGHSLDMSQTAVKKMIAEAREKGYITYDQLNTVLPPDQVSSEQI
EDVMSMLSEMGINIIEDEDAEDEDGKGSTELATTEGTREITLGSGTSEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDV
IDLEATFGDQLGDEDTTEPVVTGGTSDTQKSGDSDKQELDADGNPIAGDDDDDEDEQANM
SLAAMEAALKPQVLEALDIIADDYVKLSQMQDSRISATLNEDSSFSDTEETTYQQLRSEI
VLLVNELHLHNNRIEALIDQLYGINRRIMQIDSAIVKLADQARINRKEFVDAYRGYELDP
NWMERMADKSGRGWQMFIERSADKVEELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEA
RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLE
KVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLT
PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgaaagacacgaacgacgacaccaagaccgacgactccgataccggtcactca
ctcgacatgagtcagacggccgtcaagaagatgatcgccgaagcccgtgaaaagggctat
atcacctatgaccagctgaataccgttctgccccccgatcaggtcagttccgagcaaatc
gaagacgtgatgtcgatgctgtccgaaatgggcatcaacatcatcgaggacgaagacgcc
gaggacgaagacggcaaaggttcgaccgagctggcgaccaccgaaggcacccgcgaaata
acgctgggttcgggcacgtccgaaaaactggaccgcaccgacgatccggtgcgtatgtac
ctgcgcgaaatgggcagtgtcgaattgctgagccgcgagggcgaaatcgccatcgccaag
cgcattgaggcgggccgcaacaccatgatcgcgggcctgtgcgaaagcccgctgaccttt
caggcgatcaccatctggcgcgacgaacttcttagcgaagacattcttctgcgcgatgtg
atcgaccttgaagcgacattcggcgaccaactgggcgacgaagataccaccgagccggtt
gtgaccggtgggacgtccgatacgcaaaaatcgggcgacagtgacaagcaagagctggac
gcagacggcaatccgattgccggtgatgacgatgatgacgaagacgaacaggccaacatg
tcgctggccgctatggaagctgcgctgaaaccgcaggttctggaagcgctcgacattatt
gccgacgactacgtcaaactgtcgcaaatgcaggacagccggatttcggccacgttgaac
gaagattccagctttagcgacaccgaagagaccacctatcaacagctgcggtcggaaatt
gtattgctggtgaacgaattgcacctgcacaacaaccgtatcgaagcactgatcgaccag
ctttacggcatcaaccgccgcatcatgcagatcgacagtgccatcgttaagctggcggat
caggcgcgtatcaaccgcaaggaattcgtcgacgcctatcgcggctacgagcttgatccc
aactggatggagcgcatggccgacaagtccggtcgtggctggcagatgttcatcgaacgc
tcggcggacaaggtcgaagaactgcgtgccgatatggcgcaggtcggtcagtatgtcggt
ctggacatctcggaattccgtcgcatcgtgcagcaggtccagaagggcgagaaagaagcc
cgtcaggccaaaaaggaaatggtcgaggcgaacctgcgtctggtgatctcgattgccaag
aaatacaccaaccgcggtctgcaattcctcgacctgatccaagagggcaacatcggcctg
atgaaggccgttgataaattcgaataccgtcgcggctataaattctcgacctatgcgaca
tggtggatccgtcaggcaatcacccgctcgattgccgatcaggcgcgcaccattcgtatt
ccagtgcatatgatcgaaacgatcaacaagctggtccgcaccggacgccagatgttgcac
gagattggccgcgagccgacgcccgaggaattggcagaaaagctgcaaatgcctttggaa
aaagtccgcaaggtcatgaagatcgccaaagagccgatttcgctcgaaacgcccatcggt
gacgaggaagacagccagttgggcgatttcatcgaggacaagaatgccgtgctgcctctg
gacagcgccattcaggaaaacctcaaggaaacgaccacacgggttctggcgtcgcttacc
ccgcgcgaggaacgcgtgctacgcatgcgctttgggatcggtatgaacaccgatcacacg
ctggaagaggttggccagcagttcagcgtgacccgcgaacgtatccgccagatcgaagcc
aaggcgctgcgcaaactcaagcatcccagccggtcgcgcaagttgcggtcgttcctggat
cagtaa
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