Shewanella psychropiezotolerans: FM037_01830
Help
Entry
FM037_01830 CDS
T07745
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
spsh
Shewanella psychropiezotolerans
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsh03019
]
FM037_01830 (csrD)
Messenger RNA biogenesis [BR:
spsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FM037_01830 (csrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
bCoV_NSP1
Motif
Other DBs
NCBI-ProteinID:
QDO82202
LinkDB
All DBs
Position
423767..425677
Genome browser
AA seq
636 aa
AA seq
DB search
MKLTRLLTNKLTSFWLLSLAAVAFIFLLVALVSFTQLTYKFQQQKVTELESMLIHHYEHE
NNKALSTWLPSILTAYNTVSLTLRAEGQILYEYGPEKLGAGMITYERQLLKADNLILVIT
LPQPFKMYSLSWYEFSILVIGLLSISVFVFFGHRWLSIQLQGIEDLAVRSKLILENEYDK
ALAERGDGRPRMINRALTHLLLELDDAEKHRARFDQFIRSNTFLDPETGIGNRLFLKNRL
DALSNDKGMMAPGVLFLLEMEDMDLLQQELGDDSIDEMLHQTISDINQILDSQANSIFSR
RSFNQFAIVVPQISLKDVEKLAAKLLKVCLSQNVPETENSEDFFHIGAAYFKVGDSKEQL
LDESERALRAAQFQGTSGWFMYDKGAVDEELAKGSVRWRSFLEYALVNRRLVVFSQPVVD
SDMETHHLEISSRIRDNKNNLVRATLYIPMAIKCGLTPQFERQVIETVLFDLLCDPKGRT
TKFSINLSLDTLMSRAFIRWLKTTLLEYRHLTPWLIFEINEDIVVHHKEQLKSRLDMIKK
MGASLCVDRVGQQVVSTQYIKECHFDLIKLDRSIVTQIHLRQENQLFVRSLIGGLYRTDV
QVFAEGIESFEEWQTLKILGVSAGQGNLFSEPVEEI
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgacacgacttttaactaataaattgaccagcttttggctactttctttggca
gccgttgcatttatatttttgcttgttgccctagtcagcttcacgcaattgacctataaa
tttcaacagcagaaggtaactgaactcgagtctatgctcattcatcattatgagcatgag
aacaataaagcactctctacctggctcccctccatcttaaccgcgtataacactgtgagt
ttgaccttgcgcgccgaaggtcaaatactctacgagtatggacctgaaaaacttggtgca
gggatgatcacctatgagaggcagctgctcaaggctgacaatctcatcttagtgatcacc
ttacctcagccatttaaaatgtactcactttcctggtatgaattctccatcttagttatt
ggcttactttctatctctgtgtttgttttcttcggccacagatggttatcgatacagcta
cagggcatagaagatctggcagtgcgcagtaaactgattctagagaatgaatatgataag
gccttagccgagagaggagatggcaggccgagaatgataaatcgtgccctgacacatcta
ttattagagctagatgatgcagagaagcatagagctagattcgatcaatttatccgctca
aatacgtttttggatccggaaactgggataggaaatcggctatttctcaagaatcgtctc
gacgccttgagtaacgataaaggtatgatggctcctggtgtgctgtttttactcgagatg
gaagatatggatctgctgcagcaagagcttggtgatgactctatagatgagatgttgcat
cagacgattagcgatattaatcagatcttggacagtcaggctaacagtattttttctcgt
cgttctttcaatcagttcgccatcgtcgttcctcaaatctctttaaaagacgttgaaaaa
ttagccgctaaattactcaaggtgtgcttgagtcaaaacgtacccgagacagagaacagc
gaagattttttccacataggtgcagcctactttaaagtcggtgacagtaaggagcagtta
ctcgatgagtcagagagagcccttagggcggctcagtttcagggaaccagtggctggttt
atgtatgataaaggggccgtggatgaggagttggcgaaggggtctgttaggtggcgcagc
tttctcgagtatgctctggtaaatagacgtttagtggtcttttcccagcctgtggtcgac
agtgatatggaaactcaccacttagagatatccagtcgaatacgtgacaataaaaacaac
ctggttagagcaacgctgtatatacctatggcgataaaatgtggtctgacacctcaattt
gaacgtcaggttattgagaccgtgttgttcgatctcctctgtgatcctaagggcagaacc
actaagttcagcatcaatctcagcttagacaccctgatgagtagggcatttatccgctgg
cttaaaacgaccctgttagagtatcgacatctcactccctggctgattttcgagatcaat
gaggatatagtcgtgcatcataaggagcagctaaaatccagactcgatatgattaagaaa
atgggcgcaagcttatgcgtcgaccgcgtggggcagcaggtagtcagtactcaatacatc
aaagagtgtcatttcgatctgatcaaactggatcgttcaatcgtgactcaaatacatctt
cgtcaagaaaatcagttgtttgtgagaagtcttatcggtggtttatatagaactgatgtt
caggtctttgccgaaggaatagagtctttcgaggagtggcagaccctgaaaattttaggt
gttagtgccggacagggaaacttgttcagtgagccagttgaagaaatataa
DBGET
integrated database retrieval system