Shewanella psychropiezotolerans: FM037_06860
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Entry
FM037_06860 CDS
T07745
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spsh
Shewanella psychropiezotolerans
Pathway
spsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM037_06860 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsh03019
]
FM037_06860 (pnp)
03016 Transfer RNA biogenesis [BR:
spsh03016
]
FM037_06860 (pnp)
Enzymes [BR:
spsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FM037_06860 (pnp)
Messenger RNA biogenesis [BR:
spsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FM037_06860 (pnp)
Transfer RNA biogenesis [BR:
spsh03016
]
Prokaryotic type
tRNA degradation factors
FM037_06860 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_RRP5
S1_2
KH_KhpA-B
DUF6946
DUF3016
Motif
Other DBs
NCBI-ProteinID:
QDO83002
UniProt:
A0ABX5WXR8
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All DBs
Position
1543577..1545685
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AA seq
702 aa
AA seq
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MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKHEEPGRDFFPLTV
NYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEINPDVISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLDLIVAG
TEGAVLMVESEAASLPEEVMLGSVAYGHEQQQVVITAIKELKAEAGKPAWDWSAPVSDED
LVAKIKALAEEKFSAAYQIADKSERRDSVNALKSDAIEKLVAENADVDLREVGKILSSVE
KQVVRGRIIAGKPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERD
AQKVDSIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAI
GTHRDDISAHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASSN
GEATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLQTGQEVKVKVMEVDRQGRVRLSMKEAQPKAESAPAAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaagagttttgagtatggtcagcacacagtcacattagagactggg
gttattgcacgtcaagcagatgctgccgttttagcaagtatgggtgatactacagtcttg
gttactgtggtaggaaagaaacacgaagagccgggtcgcgactttttcccacttacagtg
aattatcaggaaagaacttacgctgccggtaagatccctggtggtttcttcaagcgtgaa
ggtcgtccatctgagagtgaaacgctgatcgcacgtcttatcgatcgtcccattcgtcct
ctattccctaatggcttcaagaatgaagttcaggtaattatcacagtcgtttctgtggat
cctgaaatcaaccctgatgtcatctctatgataggtacttctgcagccttagctatctca
ggtctgccattcaatggtccattgggtgtggcgcgtgttggttacatcaacggcgaatat
atccttaaccctgaagttagtcagttagccgagagtgacctggacctaatcgtcgcgggt
accgaaggcgcagtattgatggtggagtctgaagccgcctcattgccagaagaagttatg
ctaggcagcgtcgcctatggtcacgagcaacagcaagttgtgatcactgccatcaaggag
cttaaagctgaagcgggcaagcctgcatgggattggtctgcacctgtatctgatgaagat
ttggtcgccaaaattaaggcgcttgcagaagagaaattctcagctgcataccagattgct
gataagagtgaacgtcgtgactcggttaacgcacttaagagtgacgctatcgagaaacta
gttgctgaaaacgcggatgtcgacttacgtgaagtcggtaagatattaagtagcgttgag
aagcaagtcgtacgtggccgtatcatagcgggtaagccacgtatcgatggtcgtgagcca
gatatggttcgtggtcttaacgtaatggcaggtgtacttccacgtactcacggtagcgcg
atatttacccgtggtgagactcaagcactagtgacttgtactctaggtaccgagcgtgat
gcacagaaagttgacagcatcatgggcgaatacactaaccgctttatgctgcactacaac
ttccctccttactgtgtgggcgagacgggttttgttggttcacctaagcgtcgtgaaatt
ggtcacggtaagctagcttggcgtggtattaacgcggttatgccgtctgcagaagaattc
ccatacagcattcgcgtcgtatcagagatcactgaatcaaacggttcaagctctatggct
tctgtatgtggtacttctcttgcgttaatggatgcgggtgtaccaatcaagacatctgtt
gccggtatcgccatgggtctggttaaagagggtgacgatttcgtcgttctttctgacatt
ttaggtgatgaagatcacttaggtgatatggacttcaaagtggctggtactcgtgacggt
atcactgcactgcagatggatatcaagatcgaaggtatcacgcaagagatcatgcagatt
gcacttcagcaagcttatggcgctcgagttcatatccttaacgtgatggaccaggctatt
ggtacacatcgtgatgatatttcagctcacgcaccacgtattaccaccatcaagatcaac
ccagaaaaaatccgtgatgtgattggtaaaggtggcgctacaatccgtgcgcttacagaa
gaaactggtaccactatcgagctagaagatgatggtacagttaagatcgcatcttctaac
ggcgaagcgactaaagaagctatccgtcgtatcgaagagatcactgctgaagtcgaagtc
ggtactatctataacggtaaggtcgttcgtatcgttgatttcggtgccttcgtgacaatc
ttgccaggtaaagatggtttggttcacatctctcagatagctgaagagcgtgttgccaac
gtttctgattacctacagactggtcaagaagtcaaagttaaggtgatggaagttgatcgt
cagggtcgcgtacgtctttctatgaaagaagcacagcctaaagccgagtcagcacctgct
gccgagtaa
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