Shewanella psychropiezotolerans: FM037_12880
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Entry
FM037_12880 CDS
T07745
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
spsh
Shewanella psychropiezotolerans
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spsh01002
]
FM037_12880
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
spsh01011
]
FM037_12880
Peptidases and inhibitors [BR:
spsh01002
]
Cysteine peptidases
Family C82
FM037_12880
Peptidoglycan biosynthesis and degradation proteins [BR:
spsh01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
FM037_12880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Scaffold
Motif
Other DBs
NCBI-ProteinID:
QDO83965
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Position
2910147..2911670
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AA seq
507 aa
AA seq
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MITPSDNVSRREIMKSKMFLISLFFCSLIISIPSLSDGNSLASNLSDTQEVELIYELNDQ
QLIWFDSHGLSVNGLSLAQLLEDLGIGLGNYLSIEQVDRTKLSKGERDRAYTRACLYLLD
RVSKLSLNMNLNLELSFTQAIRKHRLSEFIEQVLPLYDEVSQLRGMIRKYKKLTHKPWPN
IGQAEFRLGQSSNKISTLRNLLVDLGDLSVKPELRQRASIYDPDIVLGIKSFQMRHGLEV
NGQLDTQTAESLSVKPETRIVQMQLNLWRWFSLPNTLPERFVWINIPGYQLQLLDQGEKL
LDMKVIVGKPLTPTPIITSSLTRFTVNPSWTPPWSIVSKELIPLDAKYPGYLNRQKFELR
KYGASSSLDLVDISSSSILNFLSEYQLVQSPGPENALGKYRFSIPNNHSIYLHDTPSKSL
FTKRIRALSHGCIRLSDPKGLLDYLMQADNRAADVERAVRGTLTHYYSIVSPTPVYITYH
TSWVDEFGKLQLRPDIYDLDRIPQYDE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgataactccatcagataatgtgtcgaggagggagataatgaaaagtaaaatgtttttg
atcagcttattcttctgttcattaataatctctattccctctttatctgatggtaactct
ttagcatcaaatctgtcagatactcaagaagtggagcttatttatgagcttaacgatcag
cagttaatttggtttgactcccatggtttaagtgtaaatggtctctcactagcacaatta
ttagaagatctaggcatagggcttggtaactatttatctatagaacaagttgatcggaca
aaactgagtaagggcgaacgagatagagcttatacccgcgcttgtctctatcttctagat
agagtgtcaaagttgagcctgaatatgaatctcaacttagaactcagcttcacacaagcg
atcagaaagcataggttatctgaatttattgaacaagttctacctctctatgatgaagtc
tcacaattacgaggaatgataagaaaatataaaaaattgacccacaaaccttggcctaac
ataggtcaagcggagtttaggcttgggcagagctcgaacaaaatttcgacactgagaaat
ttactggttgatcttggagatttaagtgttaaacctgaacttagacaaagagcgtctata
tatgatccggatatagtactagggattaagtcttttcagatgcgtcatggcctcgaagtt
aatggtcagctcgatactcaaacggcagaaagcttgagcgttaagccagagactagaata
gttcaaatgcagttaaacctatggcgttggttcagtttacctaataccttgcctgagcgg
tttgtctggataaatattccaggttaccaattacaattattggaccaaggggaaaaatta
ctggatatgaaggtgatagtaggtaagcccctgacaccaacgcctattattacttcctca
ttgactcgctttactgtcaatcctagctggacgcctccctggagtatcgtcagtaaggag
ttaatccctttggatgctaagtatccaggatacttaaaccgacaaaaatttgaattacga
aaatatggagctagttcttctcttgacttggtcgatataagcagttcttcgattctgaat
ttcttgtcagaataccagctggttcaatcccctggacctgaaaatgcccttgggaaatac
cgtttctctattcccaataatcactctatttacctgcatgacacaccatctaaatctcta
tttactaaacgtataagagccttgagtcacggttgtattaggctgtcagaccctaaaggg
cttttggattatttgatgcaagcagataacagagctgctgatgttgaaagggccgttaga
ggcaccctgacacactattattctatagttagtccgacgcctgtatatatcacttatcac
acaagctgggttgatgaatttggtaagttacaacttagacctgacatctatgatttagat
aggatccctcaatatgatgaatga
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