Shewanella psychropiezotolerans: FM037_20105
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Entry
FM037_20105 CDS
T07745
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spsh
Shewanella psychropiezotolerans
Pathway
spsh03030
DNA replication
spsh03430
Mismatch repair
spsh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FM037_20105 (dnaE)
03430 Mismatch repair
FM037_20105 (dnaE)
03440 Homologous recombination
FM037_20105 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsh03032
]
FM037_20105 (dnaE)
03400 DNA repair and recombination proteins [BR:
spsh03400
]
FM037_20105 (dnaE)
Enzymes [BR:
spsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FM037_20105 (dnaE)
DNA replication proteins [BR:
spsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FM037_20105 (dnaE)
DNA repair and recombination proteins [BR:
spsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FM037_20105 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QDO85118
UniProt:
A0ABX5X1A0
LinkDB
All DBs
Position
complement(4564366..4567839)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPSFVHLRVHSDFSMSDGLAKVKPILAKVSELGMPAVALTDQTNLCGLVKFYGACHGA
GIKPIIGADFWVRVPGFDKELCSVTVLAMDNDGYLNLTLLISDAYLRGHINDRAVIDQDW
LVKYSKGLLLLSGGRHGDIGRALIKDNQVQVDSLVEFYQTHFPDRYYLELLRTGRPDEET
YLHLAVALAEEKGLPVVATNQVVFNSPDFFDAHEIRVAISDGFTLGDPRRPKKYSDQQYF
KSSEEMCALFEDIPEAIANTVEIAKRCNVTVRLGEYFLPNFPTGELSIEDFLVKVSEDGL
EDRLEFLFPDPEVRAQKRPAYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDQNIPIGP
GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPGMTLAKAFEVEPA
LQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPIYCDSEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKKLGKDPVRIESIPLDDHKSFKLL
QRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSFPDAEYQHESLKWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLKFNVDDEGNIVYGIGAIKG
VGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDSLGPHRAAMMAT
LPEAVRAADQNAKAEAIGQHDMFGLLNNDAEDIKQQFVQCTPWPDKVWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARNHFAS
ALEVDITSDSVDETWLDSFKQVVEPWKKGAVPIIVNYAQPQAKAQFKLGDNWRVNPTDEL
MLALETLTGAGKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcctagttttgtgcatctgcgcgtccacagcgacttttccatgtctgatggc
ctggccaaagtgaaacctatcttagctaaggtgtcggagctaggcatgccagctgtggcg
ttaaccgatcagactaacttatgtggtttagttaaattttatggtgcctgtcatggtgcg
ggtatcaagcccatcataggtgcagatttttgggttagagtccctggttttgacaaagag
ctgtgttcggtcactgtgttagccatggacaatgatggatatctgaatttaaccttatta
atcagtgatgcctacctgagaggccatataaacgatagggccgttatcgaccaagattgg
ttggttaaatacagcaagggactattactgctctcgggtggacgtcatggagatattggc
agggcgctgataaaggacaaccaggttcaagtggattcactggttgagttttatcagact
cattttcccgaccgatattatctggagctgctacgtactggacgtccagacgaagagacc
tatcttcatctggctgtggcgctggcagaagagaaaggcttgcctgtggtggccactaat
caggtggtgtttaatagtcctgacttcttcgacgcccatgagatccgtgtcgctatctcc
gacggttttaccttaggcgatcctcgtcgtccgaaaaaatacagtgatcaacagtatttt
aagagcagcgaagaaatgtgtgcgctgttcgaagatattcccgaagccatagccaatacg
gtggagattgccaagcgctgtaatgtcaccgtgcgcctaggtgagtattttctgccgaac
ttccctacgggtgaacttagcatcgaagacttcctggtaaaagtgtcagaagatggcttg
gaggatcgcttagaatttctatttcccgatcctgaggttagggcacagaagcgtcctgca
tacgatgaacgtctggatatcgagcttaaggtgattaaccagatgggtttccctggctac
tttcttatcgtgatggaatttattcagtggggaaaagatcaaaatattccaatcggtccg
ggtcgtggatccggagcggggtccttagtggcttatgccctcaagatcaccgatctcgac
ccgctggaatatgaactcctgttcgagcgtttccttaacccagaacgtgtttccatgccg
gatttcgatatcgatttctgtatggacagacgagatgaagtgatcgatcacgtggccgaa
ctttatggccgtgatgcggtatcgcagatcatcaccttcggtaccatggctgccaaggcc
gttattcgagatgtgggtcgggtattagggcatccctatggcttcgtcgaccgtatctct
aagatggtgcctgccgaacctggtatgaccctggctaaagccttcgaggtcgaacctgcg
ctgcaggagtcttacgatggcgatgaggaggtcaaagatctcatcgacatgtgccgaata
ttagaaggtgtgacgcgtaacgcgggtaagcatgcgggcggcgtggtgatatcgccgacc
acaattaccgatttcgcccccatctactgtgactcggaagggaaaaacccggttacccag
ttcgataagaatgatgtcgagaccgcgggcctggtcaagtttgacttcctggggctgaga
accttaaccatcatcgactgggcactgcagatgatcaatcccaaacggaaaaaattgggt
aaagatcctgtgcgtatcgagtcgatccccctggatgatcataagagtttcaaactgttg
cagcgttatgagactacggcggtattccagctggaatcccgtggtatgaaagacttgatc
aagcgtcttcagccagacagcttcgaagatatgatcgctctggtggccctgttccgtccc
ggtccacttcagtccggcatggtagataactttatcgaacgtaagcacggtcgagaggaa
gtctctttccccgatgccgagtatcaacatgagtctcttaagtgggtactcgaacccacc
tatggcattattttgtatcaagagcaggtgatgcagatcgctcaggtgctcgcgggttat
tcacttggtggcgcggatatgctgcgtcgagccatgggtaagaagaaacccgaagagatg
gccaagcagcgtggtaccttcgaagagggcgccatcaataacggtatcgacggcgaactg
tcgatgaaaattttcgatctggtggagaaatttgccggttacggatttaacaagtctcac
tcggccgcctatgcgctggtctcctatcagacactctggctaaagacccattatccggcc
gagtttatggcagcggtaatgtctgccgatatggataacacggacaaaatagtcatcctg
gtggatgagtgtgaacgcatgggccagcctctgctaccaccagatgttaataagggtttg
cttaaattcaatgtcgatgatgaaggcaacatcgtttatggtattggcgccatcaaaggg
gtcggtgatggacctgtggagtcgatactggcagcgcgtaaggatggtccgttcaaagat
ctattcgatttctgtgcccgggtagatcttaaaaagttaaacaagcgcatcatggaaaaa
ctcatctgcgccggagccttggatagcttagggcctcatcgcgccgccatgatggcaacc
ttacccgaggctgttcgcgccgcggatcaaaatgccaaggccgaagcgattggccagcat
gatatgtttggtttactcaataatgacgccgaagatattaagcagcaatttgtgcagtgc
accccttggccggataaggtctggcttgaaggtgagcgtgaaaccttaggtctttatctc
actggtcaccctatcaatcagtacctcaaagaactgaaacactatacatcaggccgactc
aaagatgtgcatcctaccgagcgcggcaagaccatgaaagccgcgggtcttgtgattgcg
acgcgggtgatgatgaccaagcgaggttctaagatggggcttgtgactctggatgataag
agtgcccgtttggaggtgatgctattcaccgaggcgttcgagaagtttaaccacctgctg
gagaaagatcgcatcttgatcatcgaaggtgaggtgagtttcgatgacttctccggtggc
aaccgtatgacagccagaaacatcatagatatgggggaggcgcgtaatcattttgccagt
gctttagaggtggatatcaccagtgattcggtcgatgaaacttggctagatagctttaaa
caagtggtggaaccatggaaaaagggcgcagtacctatcatagtcaattatgctcaacca
caggctaaggcccagtttaagttgggggataactggagggtgaacccgacagacgaactc
atgctggcgctggaaaccttaaccggagcgggtaaggtgaggatcttgttttaa
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