Shewanella psychropiezotolerans: FM037_24185
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Entry
FM037_24185 CDS
T07745
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spsh
Shewanella psychropiezotolerans
Pathway
spsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM037_24185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsh03019
]
FM037_24185
03009 Ribosome biogenesis [BR:
spsh03009
]
FM037_24185
Enzymes [BR:
spsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FM037_24185
Messenger RNA biogenesis [BR:
spsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FM037_24185
Ribosome biogenesis [BR:
spsh03009
]
Prokaryotic type
rRNA helicases
FM037_24185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QDO85791
LinkDB
All DBs
Position
5537538..5539388
Genome browser
AA seq
616 aa
AA seq
DB search
MSSNEQTFRELGLSEPLLRALDDLGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNNIDPSINAPQILVLAPTRELAVQVAEAFASYAKFVKGLHVLPIYGGQSMHQQLN
ALRRGPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLTDPVHVKIAATTATVETIEQRFVQVSQHNKLEALVRVL
EVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGKLDIII
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMDVPSPETVTERRLSRLGEQVAEVIAKDSLDFMKGAVAKLCQELEVDTDI
LAAALLQQVQKDRPLQLPSIHERQRDSRDDRNSRDRNDRNDRNPRDRGERSERPRRDSRP
TPSNLGTADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLFDQ
ITAIDLPAGMPADVLQHLRKVRVCGRPLNIREAEGAELPSEGDSRPPRRPRRSSSDRRPS
TGDRKPHRKGSAPKES
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaacaaactttccgcgagctcggtctttccgagcctcttttgcgtgct
cttgacgaccttggctatgaaaagccaaccccgattcaagccgcaagtatcgaccctctt
atggccggtaaagacatactaggtcaggcgcagactggtacaggtaaaacaggtgctttc
gcactaccactactgaacaacatagacccttctattaatgctccgcaaattttagtcttg
gcaccgactcgtgaacttgcagtgcaagttgccgaagcgttcgctagctatgctaaattt
gtgaaaggcttacatgtactgcctatttacggtggtcagagcatgcatcagcagctgaat
gccctaagacgtggccctcaggtcatcgttggtacgcctggtcgtgtaatggaccacatg
cgtcgtggtactcttaagctagattcactaaaagctatggtgctcgacgaagccgatgag
atgctaaaaatgggcttcatcgacgatatcgaatggatccttgagcatacacctaagcaa
cgtcagcttgctcttttctctgcgaccatgccagagcaaattaagcgtgttgctaataaa
tatttgaccgaccccgttcacgttaagattgcagctaccacagctacagtcgaaactatt
gagcagcgttttgtgcaagtttcacaacacaacaaacttgaagcactggtacgtgtttta
gaagttgagaagaccgaaggtattatcatcttcgttcgtactcgtaacagttgtgttgaa
ctggctgaaaaattagaagcccgcggttacgcatcatcacctctacatggtgatatgaac
caacaagcacgtgagcgtgcaattgatcagcttaaacgcggcaagttagacatcattatt
gcaacagacgtcgcagctcgtggcctggatgttgagcgtatcggacacgtagttaactac
gatatcccatatgatactgaagcttacgttcaccgtattggtcgtaccggtcgtgcaggc
cgtacaggtatggcaattcttttcgttacacacagagaaatgcgtatgctacgcactatc
gagcgtgcaactaagagccgcatctctccgatggatgtcccaagcccagagacagtaact
gaacgtcgtctatctcgtctaggtgagcaagttgccgaagttatcgctaaagactcttta
gacttcatgaagggtgcagtagcaaagctatgtcaagagctagaagtcgatacagatatt
cttgccgccgctctgcttcagcaagtacagaaagaccgtcctctacagttaccatcgatt
cacgaacgtcaacgtgatagccgtgatgatcgtaactcacgtgaccgcaatgaccgtaat
gaccgtaatcctcgcgatcgtggtgagcgcagtgagcgtccacgtcgtgattcacgccca
actcctagcaacttaggtacggctgactcacttaaagacaatccagacgttaagatgtgt
cgttacatcatagacgttggccgtgacaatggcgttggtgtcggtaacattgtaggtgca
gtagctaatgaagctaacatcgacagccgttacatcggtcaaattcaattattcgatcaa
ataacagccatcgaccttccagccggaatgccagcggatgtactacaacaccttaggaaa
gtgcgtgtttgtggtagacctctaaacatccgtgaagctgaaggtgcagagcttccttca
gaaggagatagccgtccaccacgtcgcccacgtagatcttctagcgatcgtcgcccatca
accggtgacagaaagccacatcgtaaaggtagcgctcctaaagagagctaa
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