Shewanella psychropiezotolerans: FM037_26870
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Entry
FM037_26870 CDS
T07745
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spsh
Shewanella psychropiezotolerans
Pathway
spsh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FM037_26870 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsh03021
]
FM037_26870 (rpoC)
03400 DNA repair and recombination proteins [BR:
spsh03400
]
FM037_26870 (rpoC)
Enzymes [BR:
spsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FM037_26870 (rpoC)
Transcription machinery [BR:
spsh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FM037_26870 (rpoC)
DNA repair and recombination proteins [BR:
spsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FM037_26870 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Potyvirid-P3
Motif
Other DBs
NCBI-ProteinID:
QDO86228
LinkDB
All DBs
Position
complement(6136700..6140926)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIELEKEIEMMREELPSINSETRRKKMTKRLKLIEAFFQSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPANGEPVITPSQDVVLGLYYASRKCVNGKGEGMVFESIDEVEKAYRTG
FAAIHAQIKVRITETHIAENGERTEARRIVDTTVGRSLLSRILPKGLSFDLVNQNMGKKQ
IGKLLNTCYRQLGLKDTVVFADQLMYAGFHYATVSGASVGIDDMVIPAAKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKISKAMMDNLSTETVINRDGEEEEQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVSQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTFEGLTMKPLIEGGDVVEPLRERVL
GRVVAIDVFYPGSEKVLAPRNTLLDEAWCDALEENSIDEVIVRSVISCNTDFGVCKACYG
RDLARGHIINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNIQVKNTGTVKL
HNAKHVTNSEGKLVIVSRSSEIAIIDELGREKERYKVPYGTILEKLEEATVAAGEIIANW
DPHTHPIISEVAGTIKFVDMIEGVTMTRQTDDLTGLSSIVVMEVGQRPTAGKEMRPSIRL
LDASGEDLKIPGTEVPAQYFLPGKAIVNQDDNAAINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEYSGTISFGKETKGKRRLLITPADGGKPYEEMIPKWRNLNVFE
GEKVERGEVIADGAEAAHDILRLRGIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITDAGDSKFLAGEQAEVARVKIANRELEAQGKKPATFDRELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRLIPAGTGYAYHQKRNAALAAKASGK
TSEQPSAITASEAEQNLADLLNLAGSSD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagaccgaagaatttaacggtatc
aagatcggactagcgtcgccagatctgatccgctcttggtcatttggtgaagttaagaag
ccagaaaccattaactaccgtaccttcaagcccgagcgtgaaggcttgttctgtgcgcgt
atttttggtccagtaaaagattatgagtgtttatgtggtaaatataagcgcttaaagcac
cgtggtgtgatctgtgagaagtgtggcgttgaagttacacagactaaagtacgtcgtgag
cgtatgggtcacatagatctagccagcccagtagcacatatctggttccttaaatcactg
ccgtctcgtatcggtttgatgctggatatgactctgcgtgacatcgaacgtgtgctttac
ttcgaatcatttgtagtgatcgagcctggcatgaccagccttgagcgcggacagatgcta
accgaagagaactacctcgacgcgttagaagagtacggtgacgaattcgaagctaagatg
ggtgccgaagcagttcttgaattgctacgcgctatcgagcttgagaaagaaattgagatg
atgcgtgaagaattgccatcaatcaattctgagactcgtcgcaagaagatgactaagcgt
cttaagcttattgaggctttcttccaatcgggtaacaagcctgagtggatgatccttaaa
gtgctaccggttctgccacctgatctacgccctctggttccactagatggtggacgtttc
gctacgtctgatcttaacgacctttatcgtcgtgtgatcaaccgtaacaaccgtcttaag
cgtctgttagacctagctgcaccagacatcatagtacgcaacgaaaagcgtatgttgcaa
gagtctgtggatgcgctactggataacggtcgtcgtggtcgtgctattacaggttctaac
aagcgtccgcttaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgtgttgattactctggtcgttcggtgattaccgtaggtccaacg
cttcgcctgcatcagtgtggtcttcctaagaagatggcactcgagctatttaagcctttc
atctatggcaagcttgaaggtcgtggtctagcgaccacgattaaagcggctaagaagatg
gttgaacgtgaagttgccgaagtatgggatgtattggacgaagtaattcgtgaacatccg
gtcatgcttaaccgtgcaccaacacttcaccgtcttggtatccaggcatttgagccggta
ctgattgaaggtaaagcgattcagcttcacccactcgtatgtgcggcgtacaacgccgat
ttcgatggtgaccaaatggctgttcacgtgccgctgacgcttgaagctcagttagaagca
cgttcgttaatgatgtctactaacaacattctatcgccagcaaacggcgagccggttatc
acaccgtcacaggatgttgtattgggtctgtactacgccagccgtaagtgtgttaacggt
aaaggtgaaggcatggtgttcgaatccatcgatgaagttgaaaaagcttatcgtactggt
ttcgccgctattcatgctcaaatcaaagtgcgtattactgagactcatattgccgaaaat
ggcgagcgtaccgaggcacgtcgtatcgtagatactactgtgggtcgttcactactttct
cgcatcttaccgaaaggcttgtctttcgatctggttaaccagaatatgggtaagaagcag
ataggtaaactactgaacacttgttatcgtcaattaggtcttaaagataccgttgtcttc
gccgaccaattgatgtatgccggtttccattatgcaacagtgtcgggtgcttctgtaggc
atcgatgatatggtcatcccggctgctaagtacaccttagttgccgacgccgaagctgaa
gtgcttgagattcaagagcagttccaatcgggtcttgttaccgcaggtgagcgttacaac
aaggtcatcgatatctgggccagtgccaacgagaagatctctaaagccatgatggataac
ctgtcgacagagacagtgattaaccgtgacggtgaagaggaagagcaagagtcgtttaat
agcatctatatgatggctgactcgggcgctcgtggtagtgctgcacagattcgtcagtta
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccgattgtg
gctaacttccgtgaaggtttgaacgtatctcagtacttcatctcgactcacggtgcgcgt
aagggtctagccgataccgcattgaagacagctaactctggttacctgactcgtcgtctg
gttgatgttgcccaagatctcgtcgttattgaagatgattgtggcacattcgaaggtctg
acgatgaagccgcttatcgaaggtggtgatgttgttgagccgttacgtgagcgtgtactc
ggtcgtgtggttgctatcgatgtcttctatcctggttcagagaaggttcttgctcctcgt
aacactctgctcgatgaagcctggtgtgacgccttggaagagaactctattgatgaagtt
atcgttcgttctgtaattagctgtaataccgatttcggtgtttgtaaagcctgttatggt
cgtgatttggctcgtggtcatatcatcaaccaaggtgaagctatcggtgttgttgctgct
cagtcaattggtgagccaggaacacagctaacgatgcgtaccttccacattggtggtgcg
gcttctcgagcttctgctgaaaacaacattcaggttaagaacacaggtacagttaagcta
cataacgctaaacatgtcacgaacagcgaaggcaagttggttatcgtttctcgttcatct
gagatcgcgattatcgatgagcttggtcgtgagaaagagcgttataaggttccttacggt
acgattctggagaaactagaagaagcgactgtagcagctggcgaaatcatcgctaactgg
gatccgcacactcacccaattatctctgaggttgcgggtaccattaagttcgtcgatatg
attgaaggtgtcaccatgacacgtcaaacagatgatcttacgggtctatcttcaatcgtg
gttatggaagtaggtcaacgtccaacagctggtaaagagatgcgtccttcgattcgtctt
ctggatgctagcggtgaagacttgaagattccgggtacagaagtacctgcacaatacttc
ctgcctggtaaggcgattgtcaaccaggacgataacgcagcgattaatgtcggtgatgcg
ttagcacgtatcccacaggagtcatctaagactcgtgatattaccggtggtctacctcgc
gttgccgacttgttcgaagcgcgtaagccgaaagagccggcaattcttgccgagtactca
ggtactatctcgtttggtaaagagactaaaggtaagcgtcgtctgttgatcacgcctgcc
gatggtggcaagccttacgaagagatgatccctaagtggcgtaaccttaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgccgatggtgccgaggccgctcatgatatt
ctacgtcttcgtggcattcataaagtggctaactatatcgttaatgaagttcaagacgtt
taccgtctacagggcgtaaagattaacgataagcacatcgaagtgattatccgtcagatg
ctacgtaagtgtttgatcacagatgcaggcgacagtaagttccttgctggtgagcaagct
gaagtggcccgcgtcaagatcgctaaccgtgagcttgaagctcagggtaagaagcctgcg
accttcgaccgtgagctgttgggtatcaccaaggcatcgcttgcaacagagtcgtttatc
tctgctgcatcgttccaggaaactacccgcgtacttacggaagcggctgtaggcggtaag
agcgataaactacgcggtctgaaagagaacgtgatagtgggtcgcttgatccctgctggt
accggttatgcttaccatcagaagcgtaatgctgcattagcggctaaagcatcgggtaag
acgtctgaacagccatccgcaattactgcaagtgaagccgagcaaaacttagctgacctg
ctaaatcttgccggaagttctgattaa
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integrated database retrieval system
