Shewanella psychrotolerans: K0I62_00725
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Entry
K0I62_00725 CDS
T09306
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K0I62_00725 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsj03021
]
K0I62_00725 (rpoB)
03400 DNA repair and recombination proteins [BR:
spsj03400
]
K0I62_00725 (rpoB)
Enzymes [BR:
spsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K0I62_00725 (rpoB)
Transcription machinery [BR:
spsj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K0I62_00725 (rpoB)
DNA repair and recombination proteins [BR:
spsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K0I62_00725 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QYK01552
LinkDB
All DBs
Position
152128..156159
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFERVQYKIKKDTLVMG
LVADRLRGETASYDIKDAEGTILVEKGRRITARHIRQLEKTNTTELEVPVEYISGKIAAQ
DYIDPDTGEVLVSANAEISLEDLAKLSMAGIKEIDTLFINELDHGAYISDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIDDDEGTGI
LTKEDIVAVMQNIIKIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVI
TDQVDYLSAIEEGRYVIAQANIEIDADGRMVEEQIACRHKGESTFMRAADVQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERTLAVDSGVVVAAK
RGGYVDYVDASRIVVKVNEAELTPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGDPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQAKKD
LTEEFKILEDGVIGRARNLLLGAGYTEAQLDAIPRSQLLVQTIDDEAKQTELEQLAEQAE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGDKITAMLEEQRELA
ELRNYIKQVYELGEDVQQRVDIDSFTDEEVIRLAKNLKGGIPTATPAFDGAKEKEIKEML
ELAGLPTSGQRTLFDGRTGNQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQQ
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtccacaa
gttttggatatcccttacctattgtcaatccagttggactcctttaagaagttcaccgat
caagatcctacaggtgagcgtggtttagaagccgctttccgtagcgtttttcccatcaag
agcttttctggtaattcagagctgcaatatgtcagctataagctaggcgagccagttttt
gatgtgaaagagtgtcaaattcgcggtgttacatactctgcgccactacgtgttaagtta
cgtatggtgttgtatgaccgtgaagctgcgcctggcacagtaaaagatattaaagaacaa
gaagtctatatgggggatatccctcttatgactgataacggtacctttgttatcaacggt
actgagcgtgttatcgtttcacagctacatcgtagccctggtgtgttcttcgaccacgac
cgtggtaagacccactcttctggtaaggtgctttataacgcacgtattattccttaccgt
ggttcttggttggattttgaattcgatcctaaagatgcactattcgtacgtattgaccgt
cgtcgtaaacttgcagcttctatcatcctacgtgcgctagactactctacccaagatatc
cttgatctgttctttgaacgtgttcaatacaagattaagaaagatactttggtaatgggt
ctagttgctgatcgcctacgtggtgaaacagcaagctacgatattaaagatgctgaaggt
actatcttagttgagaagggccgtcgcattactgcgcgtcatattcgtcaacttgaaaag
acgaataccacagagcttgaagtaccagttgagtacatctctggtaagatcgcggcacaa
gattatatcgacccagatacgggcgaagtattggtttctgctaacgcagagatcagccta
gaagatcttgctaagctgtcaatggccggcatcaaagagatcgatacactgtttatcaac
gagcttgatcacggtgcatacatctctgacacactacgtatcgattctaccactaaccgt
ctagaggcgttggttgagatctatcgtatgatgcgtcctggcgagccaccaaccaaagat
gctgcagaagcactattccagaacttgttcttcagcgaagagcgttatgatctatctaaa
gtaggtcgtatgaagttcaaccgtcgtctaagcattgatgatgatgaaggtactggcatt
ctgaccaaagaagatatcgttgctgtaatgcagaacatcatcaagatccgtaacggtaat
gatgaagtcgatgatatcgatcacttgggtaaccgtcgtatccgtagtgttggcgaaatg
gctgaaaaccagttccgcgtcggtctagttcgtgtagaacgtgccgtacgtgagcgttta
agccttggggatcttaatgagctaatgcctcaagatctgatcaacgctaagccaatttct
gctgcagtgaaagagttcttcggttcttcacagctgtctcagttcatggaccaaaacaac
ccactatcagaagtgacccataagcgtcgtatttcggctcttggtcctggtggtttgact
cgtgagcgtgctggtttcgaagttcgagacgttcacccaactcactacggtcgtctatgt
ccaattgagacccctgaaggtccaaacattggtctaattaactcgttagcaagctttgcg
cgtactaactcttatggtttccttgaaacaccttaccgtaaggttgttgatggtgtgatt
actgatcaggttgattacttgtcagcaatcgaagaaggccgttacgttattgcacaggca
aacatcgagatcgatgccgatggccgtatggttgaagagcagattgcttgtcgtcataag
ggtgaatctacctttatgcgtgctgctgacgttcaatatatggacgtatcgccacaacag
atcatctcagttgctgcgtcactgattccgttcctagaacacgatgatgctaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagcggttccaacattgcgcgccgataagccgctt
gttggtactggtatcgaacgtacgctagcggttgactcaggtgttgttgttgcagctaag
cgtggtggttatgttgattacgttgacgctagccgcatcgtagttaaggtaaacgaagca
gaattgactccaggtgaagctggtatcgatatctacaacttgaccaaatacacgcgttct
aaccagaacacctgtattaaccagcgtccatgttgcagcgttggtgacccagttgttcgt
ggtgacgtactagccgatggcccatctaccgatttaggtgatttggcacttggtcagaac
atgcgtatcgcgttcatgccttggaacggttataacttcgaggattcgatcttaatctct
gagcgcgttgcgcaagaggatcgtttcaccactatccacattcaagagctttcatgtatc
gctcgtgatactaagttgggtagcgaagagatcactgctgatattccaaacgtaggtgag
tctgcgctgtctaagctagacgagtcaggtatcgtttatattggtgccgaagtgaagggt
ggcgacatcctagtgggcaaagtgacacctaagggtgaaacacagctgacgccagaagag
aagctattgcgtgctatcttcggtgaaaaagcatctgatgttaaagatagctcactgcgt
gtacctaactcagttaaaggtaccatcatcgacgttcaggtatttacccgtgacggcgtt
gagaaagataagcgtgcggtagaaatcgaagagatgcatatcgctcaggctaagaaagac
ctaactgaagaatttaagattcttgaagatggtgtcattggccgtgctcgcaacctatta
ctaggtgcaggttatactgaagcacaacttgatgcgattccacgttcacagttgctagtg
caaactatcgacgatgaagctaagcaaactgaactagagcagttagctgagcaagcggaa
gagctaaaggcagacttcgataagaagttcgagatcaagcgtcgtaagatcactcaaggt
gatgacttagcacctggcgtactgaagattgttaaggtttacctagcagttaaacgtact
atccagcctggtgataagatggcgggtcgtcacggtaacaagggtgtgatctctaagatc
aacccagtagaagatatgccgtacgacgaaaatggtaacccagtggacatcgtattgaac
ccactaggtgtaccatctcgtatgaacatcggtcaggttcttgaagtgcatttaggtgct
gcagcgaaaggtatcggtgacaagatcactgctatgctagaagagcagcgcgagctcgca
gagcttcgtaactacatcaagcaagtttatgaacttggtgaagacgtgcagcagcgcgtt
gatatcgattcatttactgatgaagaagttattcgtcttgctaagaaccttaaaggcggt
attccgactgcgactccagcattcgatggtgcaaaagagaaagaaattaaggagatgcta
gaattagcaggtcttcctacttctggacagcgcaccttgtttgacggtcgtaccggtaac
caattcgaacgtccagtaaccgtaggttacatgtacatgcttaaacttaaccacttggtt
gacgataagatgcacgcgcgttcaacaggttcttacagtcttgttactcagcaaccactg
ggcggtaaagctcagtttggtggtcagcgtttcggtgagatggaagtatgggcacttgaa
gcatacggtgccgcttacactctacaagagatgcttactgtgaagtcagatgatgttaac
ggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcagccaggtatg
cctgagtccttcaacgtattgctgaaggagatccgttcactcggtattaatatcgagttg
gatcaacagtaa
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