Shewanella psychrotolerans: K0I62_00730
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Entry
K0I62_00730 CDS
T09306
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K0I62_00730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsj03021
]
K0I62_00730 (rpoC)
03400 DNA repair and recombination proteins [BR:
spsj03400
]
K0I62_00730 (rpoC)
Enzymes [BR:
spsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K0I62_00730 (rpoC)
Transcription machinery [BR:
spsj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K0I62_00730 (rpoC)
DNA repair and recombination proteins [BR:
spsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K0I62_00730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QYK01553
LinkDB
All DBs
Position
156241..160458
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEMMREELPSINSETRRKKITKRLKLIEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVWDVLDDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECINGKGEGMAFESVAEVEKAYRTG
CAELHARVKVRITETTIADDGERTESRRIVDTTVGRALLSQILPKGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFHFATVSGASVGINDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMDNLSTETVINRDGEEETQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAEDVYYPGTEDVLAPRNTLLDEAWCDTLEEHSIDEVIVRSVISCDTDFGVCAACYG
RDLARGHIINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGNLKL
HNAKYVKNSEGKLVIVSRSSELAVIDELGREKERYKVPYGTILEKLEDATVNAGDIIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVVLDVGQRPSAGKEMRPAIRL
VGADGNDLMIPGTEVPAQYFLPGKAIVNQDDNAPINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEYSGTISFGKETKGKRRLVITPNDGGKPYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCEITEAGDSDFLPGEQVEVSRVKIANRELEAQGKAPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRLIPAGTGYAYHQKRNQAGAKKGQAE
AAPTISASEAEQNLADLLNLAGSAE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttgaagggatc
aagattggcctagcgtcgccagatctgatccgctcttggtcatttggtgaagttaagaag
ccagaaaccattaactaccgtactttcaaacctgaacgtgaaggtttgttctgtgcgcgt
atttttggtccagtaaaagactacgaatgtttatgcggtaagtataagcgtcttaagcac
cgtggcgtgatctgtgaaaagtgtggcgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacatcgatctagcaagcccagtggcacacatttggttcttgaaatcatta
ccgtcccgtatcggtttgatgctagatatgactctgcgtgatatcgaacgtgtactttac
ttcgaatcatttgttgtgatcgagcctggcatgaccagccttgaacgcggccaaatgctg
actgaagaaaactacctcgacgcactcgaagagtacggtgatgagttcgaagctaagatg
ggtgctgaagccgttctagaattgctacgtgctatcgatcttgagaaagagattgagatg
atgcgcgaagagttgccatcaatcaactctgagactcgtcgtaagaagatcactaagcgt
cttaagctcattgaagctttcttcacttcaggcaacaagccagagtggatgatcctcaaa
gtactgccggttctgccaccagatctacgtcctctagttccactagatggcggtcgtttt
gctacgtctgatttgaacgacttataccgtcgtgtgatcaaccgtaacaaccgtctaaag
cgtctattagacctagctgctccagacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgcgattacgggctctaac
aaacgtccgcttaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgtgttgactactcaggccgttcggtaattaccgttggtcctacc
ctgcgtctacaccagtgtggtcttcctaagaagatggcactcgagctatttaagccattc
atctatggcaagttagaaggtcgtggcctagctactaccatcaaagctgctaagaagatg
gtagagcgtgaagtaccagaagtatgggacgtgctagatgacgtgatccgcgaacaccca
gtgatgcttaaccgtgcaccaacactgcatagactaggtatccaggcgttcgaacctgtc
ctcatagaaggtaaagcgattcagctacatccactcgtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggctgttcacgtgccgctaacgcttgaagcgcagctagaagca
cgttcactcatgatgtcgaccaacaacatcctttcacctgcaaacggtgagccggtgatc
acaccgtcacaggacgttgtattgggcctttactacaccagccgtgaatgcattaacggt
aaaggtgaaggcatggcgttcgaatcggttgccgaagttgaaaaagcttaccgcactggt
tgcgctgaactacatgctcgcgtcaaggttcgtattactgagacaactattgctgatgat
ggcgaacgtaccgaaagccgtcgtatcgtagatacgactgtgggccgcgcactattatct
caaattctgccaaaaggcttatcttatgatttggttaaccaaaacatgggtaagaagcag
atctctaagctattgaacacttgttaccgtcaactcggtcttaaagataccgttatcttt
gctgaccaattgatgtataccggtttccactttgcgacagtatcgggtgcctctgtgggt
atcaacgatatggttattcctgatgagaagtacacgcttgtagcagatgctgaagctgaa
gtacttgagattcaagaacagttccagtcgggtcttgttactgccggtgagcgttacaac
aaagtcatcgatatctgggcaagcgcgaacgaaaaagtttctaaagcgatgatggataac
ctgtctactgagacagtgattaaccgtgatggcgaagaagaaactcaagcatcgtttaac
agtatctacatgatggccgactcgggcgctcgtggtagtgctgcacagattcgtcagcta
gcgggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattacg
gcgaacttccgtgaaggtctaaacgtactacagtactttatctctactcacggtgcgcgt
aagggtctagcggatacggcacttaagacagcgaactcgggttacctaactcgtcgtctt
gttgacgttgcacaagatttagttgttatcgaagacgattgtggtacgcacgaaggtcta
accatgaagccgctgattgaaggtggtgatgttgttgagccgttacgtgagcgcgtactg
ggtcgtgtggttgcagaagacgtttattaccctggtactgaagacgttcttgcgcctcgt
aacaccttacttgatgaagcatggtgtgacaccttagaagagcattcaatcgatgaagtg
attgtgcgttctgttatcagctgtgacacggactttggtgtgtgtgctgcctgttatggt
cgtgatttggctcgtggtcatatcatcaaccaaggtgaagctatcggtgttgttgctgct
cagtcaattggtgagccaggtacacagcttacgatgcgtacgttccacattggtggtgcg
gcatctcgagcttctgctgaaaacaacgttcaagttaagaatgcgggtaaccttaaactg
cacaacgctaaatatgttaaaaacagcgaaggcaagttggttatcgtatcgcgttcatct
gagcttgcagtaattgatgagcttggccgtgagaaagagcgttacaaggtaccttacggt
acgatcctagaaaaattagaagatgcgacagttaacgctggtgacatcattgctaactgg
gatccgcatactcacccaatcatctctgaagttgcgggtagcatcaagttcgttgatatg
attgatggtgtcactatgacgcgtcaaacagatgaactaacgggtctatcttcaatcgtc
gtattagatgttggtcaacgtccttctgctggtaaagagatgcgtcctgcgattcgtctg
gttggtgctgatggcaacgacttgatgatcccgggtactgaagtacctgcgcaatacttc
ttgccaggtaaggcgattgtaaaccaagacgataatgcaccaattaacgtgggtgacgct
ttagcacgtattccacaagaatcgtctaagactcgcgatattaccggtggtctaccacgc
gttgctgacttgttcgaagcgcgtaagccaaaagagccagcaattcttgctgagtactca
ggtactatctcgtttggtaaagaaaccaaaggtaagcgtcgtctggtgatcacgcctaac
gatggtggtaagccatacgaagagatgattcctaagtggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagtgatcgctgacggcccagaagctgcacacgacatt
ctgcgtctacgtggtattcacaaggtggctaactacatcgttaacgaagtccaagacgtt
taccgtctacagggcgtaaaaattaacgataagcatatcgaagtgattatccgtcagatg
ctgcgtaagtgtgagatcactgaagcgggtgatagtgatttcttacctggtgagcaagtg
gaagtgtctcgcgttaagatcgctaaccgcgaacttgaagcacaaggcaaagctcctgct
aagttcgaacgtgaactactgggtatcactaaagcgtctttggcgactgagtcatttatc
tcagcggcatcgttccaggaaactacgcgcgtattgactgaagctgccgttggcggtaag
agcgataagctacgtggtctaaaagagaacgttatcgttggtcgtttgatccctgctggt
actggttatgcgtatcaccagaaacgcaatcaagcgggcgctaagaaaggtcaggctgaa
gctgcacctactattagtgcaagtgaagctgagcaaaacttggcagatctactaaatcta
gcgggtagtgctgaataa
DBGET
integrated database retrieval system
