Shewanella psychrotolerans: K0I62_01850
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Entry
K0I62_01850 CDS
T09306
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I62_01850 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsj03019
]
K0I62_01850 (recQ)
03400 DNA repair and recombination proteins [BR:
spsj03400
]
K0I62_01850 (recQ)
Enzymes [BR:
spsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0I62_01850 (recQ)
Messenger RNA biogenesis [BR:
spsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I62_01850 (recQ)
DNA repair and recombination proteins [BR:
spsj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K0I62_01850 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
HEM4
Motif
Other DBs
NCBI-ProteinID:
QYK01757
LinkDB
All DBs
Position
398832..400664
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AA seq
610 aa
AA seq
DB search
MEATVSHLDTTDNDPLASCLQAVFGYRTFRKGQREVIEQAFLGQDSLVIMPTGGGKSLCY
QLPALLMPGLTIVVSPLISLMKDQVDSLKQMGVAAGYLNSSLSREDSQTIFQQMHRGELK
LLYVSPERLLMASFIERIQHLQISLFAIDEAHCISQWGHDFRPEYASLGQLRQYFPIVPI
MALTATADQATRQDICQRLGISPYVLLTSFDRPNIRYTVAEKLNAANQLRQFIQAQNGNS
GIIYCGSRRRVDEVAERLRLQGYKADGYHAGKTQQERSDIQERFLKDQLDIVVATVAFGM
GINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQSEPG
SQQQVEFHKLNTMAAFAEAQTCRRQVLLHYFDESASKPCGNCDICLDPPKRYDGVEDAQK
VLSCVFRLQQKFGVNHIIEVLRGSKSASVMDRGHDKLSTWGIGKDKSHEFWLSIIRQIIH
LGFASQDITRGSSIKLNPQARAVLKGELPLLLAEPRLALKTDVKRRGSSRAPLNYDRKLF
ARLKLLRRSLAEELDVPPYLVFNDATLAEMAAMLPTSPGEMLAVNGVGETKLNRFGGEFL
DEISHYLTQG
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggaagctaccgtaagccaccttgataccactgataatgatccgctagcgagttgtttg
caggcggtatttggctatcgtacttttaggaaaggtcagcgagaagttatagaacaggcg
ttcttggggcaagattcattagtcattatgcctacaggcggtggaaaaagcttgtgttat
caattacccgcgctgctaatgcctgggcttaccatagtcgtttcgccgttaatctcattg
atgaaggatcaggtcgatagcttaaagcagatgggggttgccgctggttatttgaactct
tctttatctcgcgaagattcgcagaccatttttcagcagatgcacagaggtgagcttaaa
ctgctttacgtttcaccagagcggctattgatggcgagctttattgagcggattcaacac
ttacaaatatctctatttgctatcgatgaagcccattgtatctcgcagtggggtcatgat
tttaggcctgaatatgcttccttaggccagttgcggcagtattttcccatagtgccgatt
atggcgcttaccgctacggctgatcaggcgactcggcaagatatttgtcagcgtttgggg
attagcccttatgtattgctgaccagttttgatcgtccaaacattcgctacacggttgcc
gagaagttgaacgcagctaatcagctcaggcagtttattcaagctcagaacggaaatagt
ggcatcatctattgtggtagtcgccgccgagttgatgaagttgccgaacgtttacgtcta
caaggttataaggctgatggttatcacgcgggtaaaacgcaacaagagcgcagcgatatt
caagaacgctttttgaaagatcagcttgatatcgtggtcgcaacggttgcgtttgggatg
ggaattaataagtctaatgtacgatttgtagtgcattacgatattcctaaaagtatcgaa
gcctattatcaagaaacagggcgtgcaggtcgtgatggcctcgatgctgaagcttttatg
ttatttgatcccgccgatattggccgagttcgtcatttgattgagcaatctgaacctggt
tcacagcaacaagttgagtttcataaactcaacacgatggcggcttttgctgaagcgcaa
acgtgtagacgacaagtgttgctgcactattttgatgaaagcgcatcaaagccctgtggt
aactgtgatatctgtcttgatcctccgaaacgctacgatggtgttgaagatgctcaaaaa
gtattgtcatgtgtgtttcgattgcagcagaaatttggcgtcaaccacattatcgaagta
ctcagaggctcaaaatctgcaagtgtgatggatagagggcacgacaagctatccacctgg
gggatcggtaaggataaaagccatgagttttggctgagtattattcgtcaaattattcat
ctcggcttcgctagtcaagatatcacccgtggctcatcgatcaagcttaatcctcaagct
agagccgtacttaaaggggagttaccattactattggctgagccccgactggcactgaaa
accgatgttaaacggagaggtagcagtcgagctccgcttaattacgatagaaagctgttt
gctcgtttaaagttgttaagacgcagtcttgcggaagagttagatgtgccgccctacttg
gttttcaacgatgcgactttagccgaaatggcggcaatgttgccgaccagtcctggtgaa
atgttagcggttaatggcgttggagaaaccaaactaaatcgttttggtggtgaattctta
gatgagataagtcactatttaactcaggggtag
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