Shewanella psychrotolerans: K0I62_02040
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Entry
K0I62_02040 CDS
T09306
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
spsj
Shewanella psychrotolerans
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsj03019
]
K0I62_02040 (csrD)
Messenger RNA biogenesis [BR:
spsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0I62_02040 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GGDEF_GdpP
Aa_trans
Motif
Other DBs
NCBI-ProteinID:
QYK01787
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All DBs
Position
443302..445212
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AA seq
636 aa
AA seq
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MKITEILTKKLTAFWLLSLAAVAFIFLFIALVSFVQLTYKFQQHQMSEFELMLLQHQQQH
QLKHLDIWLPQILSAYKAQHFLLTRNGEVVYQYENSDDETSLVNYERVVSEPLALTFNIS
LPQPFVLNNVSWHGMLIFLFGVAAIWLFVRWGHTWLAQQLEGVEELAKRSHLILSGDYDK
ALAESGHGRPRLINRALTQLLLELEDAQKQRARFDQFIRSNTFLDPETGIGNRLFLKNRL
DALSNGEGMMAPGVLLLLEMEDLDLLQQEMSEEMIHELLSQTISGISKLLDTQANSIFSR
RSYNQFAIVVPQISLADVEKLAAKLLKVCLAQPLDGVINQNDFFHIGLAYFKVGESKEQL
LEEAEMALRAAQFQGNSSWFMYDKGAVDGEFARGTVRWRSFLEYALVNKRVVAFSQPVMD
SDGLEHHKEISCRLRDNSGGLVRATLFLPMAIKCGLTPQIERQVIEAVLFDLLVSNANPD
ARYSINLSLDTLTSRAFIRWLKTTLLEYRHLASKLIFEVNEDILVHNIDKLRPPLDMISK
MGASLCVDRVGQQVVSMEYIQACKIDIIKLHRSIVRQIHLRQENQLFVRSIIGGLYRSEV
QFFAEGIESFEEWQTLKILGVSAGQGSLFSEPMEEV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcactgaaatactgactaaaaaattaaccgctttttggctgctatctttagct
gctgtagcgtttatctttttatttatcgctttggtcagttttgttcagctaacctataaa
tttcaacaacaccagatgtccgaatttgagttgatgttactgcagcatcaacagcagcat
caattaaaacacctcgatatttggttaccgcaaatactctctgcctataaggctcagcat
tttttgttaactcgtaatggtgaagtggtttatcagtatgaaaattccgatgatgaaacc
agtttagtgaattacgaacgagtagtaagcgagcctctggcattaacatttaatatcagt
ttaccgcagccctttgtacttaataatgtaagttggcatggtatgctgatttttctcttc
ggtgtcgcggccatatggttgtttgtgcgctggggccatacttggttagctcagcagctt
gagggggtcgaagagctcgccaagcgcagtcatcttattttgtcgggggattatgataaa
gctctcgctgaaagcggccacggtcgaccacgcttgattaatcgtgcattgacacagcta
ttactcgaacttgaggatgcccaaaaacaacgtgcccgcttcgatcagtttattcgctct
aatacttttcttgatcctgagactggaataggtaaccgtttatttttaaagaaccgactc
gacgccttaagtaatggtgagggcatgatggcgcctggagtgctgcttttgttagagatg
gaagatcttgacctacttcagcaggagatgagtgaagagatgatccatgaactgctcagt
caaacgattagcgggataagcaagttacttgatactcaagcgaacagtatattctcccgt
cgctcttataatcagtttgcgattgttgtgccgcagatttcgttagctgatgtggaaaag
cttgctgctaaattattaaaagtctgcttagctcaacctctagatggggttatcaaccaa
aatgatttttttcatatcggattggcgtatttcaaggtgggagagagtaaagagcagttg
ctcgaagaagctgagatggctttgagggctgcccaattccaaggcaatagtagttggttt
atgtatgataaaggcgctgtggatggagaatttgctcgaggcactgtacgttggcgtagc
tttttagaatatgccttggtaaacaaacgggttgttgctttctcccaaccagtaatggat
agcgatggcctcgaacatcacaaagagatctcttgccggcttcgagataacagtggtgga
ctggtgcgtgcgacgctgtttttaccaatggcgataaagtgtggtttgactccgcagata
gagcgtcaggtgattgaggccgtgctgtttgatctactggtgagtaatgctaatcctgat
gctagatacagtatcaacttaagtttagataccttaactagccgcgcgtttattcgctgg
ttaaaaaccactttactcgaataccgccacctcgcttcgaaacttatttttgaggtgaac
gaagatatcttggttcataatattgataaattaaggccgcctttggacatgatcagcaag
atgggggctagtttgtgtgtcgatcgagtgggtcaacaagtggtgagtatggaatatatt
caagcctgcaaaatcgatatcattaagctgcatcgttcaatcgtgagacaaattcatcta
cgtcaggaaaatcaactgtttgtaaggagtattatcgggggattgtatcgctccgaagta
cagttttttgccgaaggtattgagtcatttgaagagtggcaaacattgaaaattttaggg
gtgagtgcaggccagggaagtctctttagcgagccgatggaggaagtttaa
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